Resource
| Id | reference/Marmoset/gene_models/RefSeq_105renamed |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary | Marmoset (Callithrix jacchus) RefSeq Annotation Release 105 gene models |
| Description |
NCBI RefSeq gene models for the common marmoset (Callithrix jacchus), Annotation Release 105, on the Callithrix_jacchus_cj1700_1.1 genome assembly (GCF_009663435.1; calJac4). Zemke et al. (2023) used the cj1700_1.1 (calJac4) marmoset genome assembly and reported the annotation as GCA_009663435.2. The exact GTF file used in the study was not specified. This resource provides NCBI RefSeq Annotation Release 105 for the corresponding cj1700_1.1 RefSeq assembly, GCF_009663435.1. Downloaded from: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/663/435/GCF_009663435.1_Callithrix_jacchus_cj1700_1.1/GCF_009663435.1_Callithrix_jacchus_cj1700_1.1_genomic.gtf.gz Download date: 9/14/2026 Sequence names in the downloaded GTF were renamed to the UCSC calJac4 chromosome naming convention using the official UCSC chromosome alias file: https://hgdownload.soe.ucsc.edu/goldenPath/calJac4/bigZips/calJac4.chromAlias.txt Only the sequence names in the first column of the GTF were changed. Gene models, transcript and gene identifiers, genomic coordinates, strand information, and annotation attributes were otherwise preserved. The renamed GTF was transformed to GAIn format by: to_gpf_gene_models_format renamed.gtf.gz renamed.txt.gz |
| Labels |
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Configuration
Gene models file: renamed.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 107,814 | 85,291 | 35,145 | 22,410 |
| chr1 | 8,561 | 6,711 | 2,705 | 1,686 |
| chr1_NW_023264043v1_random | 1 | 1 | 1 | 1 |
| chr2 | 5,752 | 4,429 | 2,011 | 1,245 |
| chr3 | 4,488 | 3,384 | 1,500 | 850 |
| chr4 | 5,680 | 4,265 | 2,050 | 1,213 |
| chr5 | 9,191 | 7,437 | 3,002 | 2,026 |
| chr6 | 5,272 | 4,088 | 1,683 | 924 |
| chr7 | 7,282 | 5,770 | 2,170 | 1,345 |
| chr8 | 3,693 | 2,850 | 1,263 | 763 |
| chr9 | 5,547 | 4,488 | 1,763 | 1,152 |
| chr9_NW_023264045v1_random | 61 | 48 | 7 | 4 |
| chr10 | 5,905 | 4,699 | 1,920 | 1,229 |
| chr10_NW_023264046v1_random | 1 | 0 | 1 | 0 |
| chr11 | 6,275 | 5,237 | 2,045 | 1,467 |
| chr11_NW_023264047v1_random | 3 | 3 | 3 | 3 |
| chr12 | 5,556 | 4,553 | 1,672 | 1,119 |
| chr12_NW_023264048v1_random | 7 | 6 | 2 | 1 |
| chr12_NW_023264049v1_random | 1 | 1 | 1 | 1 |
| chr13 | 3,305 | 2,420 | 1,073 | 601 |
| chr14 | 3,702 | 2,845 | 1,283 | 758 |
| chr15 | 4,373 | 3,585 | 1,194 | 801 |
| chr16 | 2,498 | 1,905 | 815 | 486 |
| chr17 | 2,432 | 1,783 | 747 | 403 |
| chr18 | 2,612 | 2,043 | 940 | 616 |
| chr19 | 2,061 | 1,568 | 688 | 424 |
| chr20 | 1,985 | 1,591 | 601 | 394 |
| chr21 | 1,120 | 841 | 433 | 246 |
| chr22 | 5,788 | 5,095 | 1,745 | 1,411 |
| chrX | 3,511 | 2,995 | 1,275 | 926 |
| chrY | 208 | 146 | 83 | 61 |
| chrUn_NW_023264054v1 | 2 | 0 | 1 | 0 |
| chrUn_NW_023264059v1 | 4 | 4 | 3 | 3 |
| chrUn_NW_023264061v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264065v1 | 2 | 0 | 1 | 0 |
| chrUn_NW_023264066v1 | 2 | 0 | 2 | 0 |
| chrUn_NW_023264072v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264075v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264078v1 | 60 | 8 | 6 | 3 |
| chrUn_NW_023264081v1 | 3 | 0 | 3 | 0 |
| chrUn_NW_023264082v1 | 2 | 2 | 2 | 2 |
| chrUn_NW_023264083v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264087v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264091v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264106v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264113v1 | 4 | 2 | 3 | 1 |
| chrUn_NW_023264121v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264122v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264124v1 | 7 | 0 | 7 | 0 |
| chrUn_NW_023264129v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264141v1 | 2 | 2 | 2 | 2 |
| chrUn_NW_023264144v1 | 15 | 11 | 6 | 5 |
| chrUn_NW_023264157v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264161v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264193v1 | 6 | 6 | 4 | 4 |
| chrUn_NW_023264201v1 | 17 | 17 | 1 | 1 |
| chrUn_NW_023264208v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264212v1 | 18 | 16 | 2 | 2 |
| chrUn_NW_023264225v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264243v1 | 37 | 25 | 3 | 1 |
| chrUn_NW_023264244v1 | 4 | 4 | 1 | 1 |
| chrUn_NW_023264246v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264251v1 | 9 | 5 | 4 | 3 |
| chrUn_NW_023264254v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264255v1 | 11 | 6 | 2 | 2 |
| chrUn_NW_023264257v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264258v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264260v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264265v1 | 4 | 3 | 3 | 2 |
| chrUn_NW_023264269v1 | 2 | 1 | 2 | 1 |
| chrUn_NW_023264270v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264272v1 | 5 | 3 | 3 | 1 |
| chrUn_NW_023264273v1 | 4 | 2 | 3 | 1 |
| chrUn_NW_023264279v1 | 6 | 3 | 4 | 2 |
| chrUn_NW_023264287v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264290v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264291v1 | 8 | 8 | 5 | 5 |
| chrUn_NW_023264295v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264301v1 | 14 | 10 | 4 | 4 |
| chrUn_NW_023264306v1 | 3 | 3 | 2 | 2 |
| chrUn_NW_023264311v1 | 4 | 3 | 4 | 3 |
| chrUn_NW_023264316v1 | 4 | 3 | 4 | 3 |
| chrUn_NW_023264323v1 | 6 | 5 | 3 | 2 |
| chrUn_NW_023264325v1 | 4 | 3 | 3 | 2 |
| chrUn_NW_023264326v1 | 6 | 3 | 3 | 1 |
| chrUn_NW_023264328v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264339v1 | 2 | 1 | 2 | 1 |
| chrUn_NW_023264342v1 | 2 | 1 | 2 | 1 |
| chrUn_NW_023264346v1 | 2 | 2 | 2 | 2 |
| chrUn_NW_023264348v1 | 2 | 0 | 2 | 0 |
| chrUn_NW_023264350v1 | 17 | 11 | 3 | 2 |
| chrUn_NW_023264353v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264358v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264359v1 | 5 | 5 | 2 | 2 |
| chrUn_NW_023264360v1 | 2 | 1 | 2 | 1 |
| chrUn_NW_023264362v1 | 3 | 0 | 1 | 0 |
| chrUn_NW_023264363v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264365v1 | 2 | 1 | 1 | 1 |
| chrUn_NW_023264376v1 | 7 | 6 | 3 | 2 |
| chrUn_NW_023264382v1 | 7 | 2 | 2 | 1 |
| chrUn_NW_023264386v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264387v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264403v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264411v1 | 2 | 2 | 2 | 2 |
| chrUn_NW_023264412v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264417v1 | 6 | 3 | 4 | 3 |
| chrUn_NW_023264419v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264421v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264426v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264445v1 | 3 | 3 | 3 | 3 |
| chrUn_NW_023264446v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264448v1 | 4 | 4 | 1 | 1 |
| chrUn_NW_023264449v1 | 3 | 1 | 2 | 1 |
| chrUn_NW_023264451v1 | 2 | 0 | 2 | 0 |
| chrUn_NW_023264454v1 | 6 | 6 | 2 | 2 |
| chrUn_NW_023264455v1 | 3 | 0 | 3 | 0 |
| chrUn_NW_023264461v1 | 2 | 2 | 1 | 1 |
| chrUn_NW_023264465v1 | 6 | 5 | 3 | 2 |
| chrUn_NW_023264477v1 | 2 | 0 | 1 | 0 |
| chrUn_NW_023264481v1 | 17 | 11 | 4 | 3 |
| chrUn_NW_023264482v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264487v1 | 3 | 1 | 3 | 1 |
| chrUn_NW_023264488v1 | 2 | 2 | 1 | 1 |
| chrUn_NW_023264492v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264496v1 | 2 | 2 | 1 | 1 |
| chrUn_NW_023264498v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264500v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264505v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264507v1 | 3 | 3 | 1 | 1 |
| chrUn_NW_023264513v1 | 4 | 4 | 2 | 2 |
| chrUn_NW_023264518v1 | 4 | 3 | 1 | 1 |
| chrUn_NW_023264519v1 | 4 | 3 | 1 | 1 |
| chrUn_NW_023264521v1 | 2 | 1 | 2 | 1 |
| chrUn_NW_023264526v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264529v1 | 9 | 0 | 1 | 0 |
| chrUn_NW_023264536v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264538v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264539v1 | 3 | 3 | 1 | 1 |
| chrUn_NW_023264541v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264542v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264548v1 | 5 | 1 | 2 | 1 |
| chrUn_NW_023264550v1 | 16 | 1 | 3 | 1 |
| chrUn_NW_023264551v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264552v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264560v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264561v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264571v1 | 2 | 2 | 1 | 1 |
| chrUn_NW_023264588v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264600v1 | 3 | 3 | 1 | 1 |
| chrUn_NW_023264605v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264614v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264620v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264621v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264627v1 | 3 | 2 | 1 | 1 |
| chrUn_NW_023264635v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264639v1 | 4 | 0 | 1 | 0 |
| chrUn_NW_023264648v1 | 3 | 2 | 1 | 1 |
| chrUn_NW_023264657v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264664v1 | 3 | 2 | 2 | 1 |
| chrUn_NW_023264665v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264670v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264671v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264673v1 | 3 | 0 | 3 | 0 |
| chrUn_NW_023264679v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264681v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264689v1 | 2 | 2 | 1 | 1 |
| chrUn_NW_023264706v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264717v1 | 6 | 5 | 1 | 1 |
| chrUn_NW_023264719v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264730v1 | 3 | 0 | 1 | 0 |
| chrUn_NW_023264739v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264747v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264751v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264769v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264773v1 | 2 | 0 | 1 | 0 |
| chrUn_NW_023264816v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264819v1 | 3 | 0 | 1 | 0 |
| chrUn_NW_023264820v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264852v1 | 1 | 0 | 1 | 0 |
| chrUn_NW_023264906v1 | 1 | 1 | 1 | 1 |
| chrUn_NW_023264943v1 | 2 | 1 | 2 | 1 |
| chrUn_NW_023264944v1 | 4 | 4 | 1 | 1 |
| chrUn_NW_023264945v1 | 2 | 0 | 2 | 0 |
| chrUn_NW_023264947v1 | 3 | 3 | 1 | 1 |
| chrUn_NW_023264952v1 | 8 | 4 | 7 | 3 |
| chrUn_NW_023264953v1 | 46 | 42 | 46 | 42 |
| chrUn_NW_023264956v1 | 2 | 2 | 2 | 2 |
| chrUn_NW_023264957v1 | 9 | 5 | 8 | 4 |
| chrUn_NW_023264962v1 | 3 | 2 | 3 | 2 |
| chrUn_NW_023264963v1 | 5 | 1 | 5 | 1 |
| chrUn_NW_023264964v1 | 36 | 2 | 5 | 2 |
| chrUn_NW_023264965v1 | 11 | 10 | 3 | 2 |
| chrUn_NW_023264966v1 | 30 | 30 | 2 | 2 |
| chrUn_NW_023264967v1 | 5 | 0 | 2 | 0 |
| chrUn_NW_023264968v1 | 19 | 0 | 7 | 0 |
| chrUn_NW_023264969v1 | 4 | 0 | 4 | 0 |
| chrUn_NW_023264970v1 | 11 | 4 | 5 | 3 |
| chrUn_NW_023264971v1 | 26 | 14 | 19 | 7 |
| chrUn_NW_023264972v1 | 45 | 34 | 19 | 9 |
| chrUn_NW_023264973v1 | 6 | 0 | 6 | 0 |
| chrUn_NW_023264974v1 | 29 | 7 | 3 | 2 |
| chrUn_NW_023264976v1 | 3 | 3 | 2 | 2 |
| chrUn_NW_023264978v1 | 6 | 0 | 4 | 0 |
| chrUn_NW_023264979v1 | 23 | 8 | 9 | 5 |
| chrUn_NW_023264980v1 | 21 | 15 | 14 | 8 |
| chrM | 37 | 13 | 37 | 13 |
Files
| Filename | Size | md5 |
|---|---|---|
| GCF_009663435.1_Callithrix_jacchus_cj1700_1.1_genomic.gtf.gz | 27.6 MB | c45b2741a78be784207e707923a537eb |
| calJac4.chromAlias.txt | 67.99 KB | 6b03f853513fc75a83e6983710dcbfb0 |
| genomic_resource.yaml | 1.5 KB | 8888bfc0dbe5cd92c8d64f9bafb7bd87 |
| renamed.gtf.gz | 27.43 MB | 513374bb02f29129983dcd24255dc067 |
| renamed.txt.gz | 7.32 MB | cc738dd9772e46378a30ee52ee065fb1 |
| statistics/ |