Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/03a248f86e5097210b0343b1c22edb588a592d41content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 03a248f86e5097210b0343b1c22edb588a592d41
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 03a248f86e5097210b0343b1c22edb588a592d41
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2305_A01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAGGTTAAGTCAATTG-2305_A01, CGATTTGCAGAAACGT-2305_A01, TTTAAGCCACAATGCC-2305_A01, CTAAGGTTCACAGCGC-2305_A01, TTATTGCTCCAGGGAG-2305_A01 (top 5 of 462 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
33,350,171
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 33350171
chr1 2941772
chr2 2608223
chr3 2167180
chr4 1724271
chr5 1868662
chr6 1861272
chr7 1790293
chr8 1538329
chr9 1370413
chr10 1550775
chr11 1770602
chr12 1674284
chr13 915812
chr14 1114719
chr15 1025734
chr16 1194007
chr17 1418694
chr18 773755
chr19 1268630
chr20 855421
chr21 385276
chr22 658051
chrX 862899
chrY 1866
GL000009.2 71
GL000194.1 752
GL000195.1 988
GL000205.2 2306
GL000213.1 14
GL000218.1 571
GL000219.1 3313
KI270711.1 66
KI270713.1 379
KI270721.1 17
KI270726.1 2
KI270727.1 58
KI270728.1 613
KI270731.1 11
KI270734.1 70

Fragment lengths

fragments min max mean median
fragments 33350171 1 5022 213.65 178
global fragment-length histogram

Files

Filename Size md5
03a248f86e5097210b0343b1c22edb588a592d41.gz 286.65 MB f6f4ca0665f0bbe821ce0bc3e8c9af80
03a248f86e5097210b0343b1c22edb588a592d41.gz.tbi 575.75 KB 7f7f13fd6af19137180594de1de99baf
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9fec267363f1ec8138b58af7b797d4a1
statistics/