Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0575f26cb1e1e646c422658518fe6927eac5c31acontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0575f26cb1e1e646c422658518fe6927eac5c31a
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0575f26cb1e1e646c422658518fe6927eac5c31a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2526_A01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GACCTTTGTAGGTTAT-2526_A01, ACCTAAGGTTTGCTGT-2526_A01, CTAAGTCAGGAGGCAT-2526_A01, TCTCACCAGGTTTACA-2526_A01, AGAATCGAGGAGGGTT-2526_A01 (top 5 of 3329 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
184,502,591
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 184502591
chr1 16149725
chr2 14546852
chr3 12311585
chr4 9892191
chr5 10370902
chr6 10249802
chr7 10003398
chr8 8493985
chr9 7544164
chr10 8554795
chr11 9713732
chr12 9041460
chr13 5134287
chr14 6142347
chr15 5706250
chr16 6638572
chr17 7625344
chr18 4335751
chr19 6446757
chr20 4741514
chr21 2174701
chr22 3711201
chrX 4924382
chrY 11774
GL000009.2 1163
GL000194.1 3545
GL000195.1 3307
GL000205.2 10055
GL000213.1 130
GL000218.1 2564
GL000219.1 10145
KI270711.1 448
KI270713.1 2418
KI270721.1 195
KI270726.1 13
KI270727.1 561
KI270728.1 1977
KI270731.1 149
KI270734.1 450

Fragment lengths

fragments min max mean median
fragments 184502591 1 5024 190.03 165
global fragment-length histogram

Files

Filename Size md5
0575f26cb1e1e646c422658518fe6927eac5c31a.gz 1.76 GB 302ba797ab711c847f58257d32316186
0575f26cb1e1e646c422658518fe6927eac5c31a.gz.tbi 1014.24 KB b5068d89888eb752832243079e3d424b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 8c6578d73272dd41a76afcd32b992549
statistics/