Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/06043bb557ca604218ca7f91581e83d93a4625e7content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 06043bb557ca604218ca7f91581e83d93a4625e7
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 06043bb557ca604218ca7f91581e83d93a4625e7
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2372_C04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGCGTGCTCCGGAACC-2372_C04, GTAGCTGTCTGGCAAT-2372_C04, ACGCCACAGACAACAG-2372_C04, GCAATCTAGCTGGCTA-2372_C04, GGATGGCCATTGTCAG-2372_C04 (top 5 of 4763 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
189,432,528
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 189432528
chr1 17271017
chr2 14568398
chr3 11900719
chr4 9322013
chr5 10053411
chr6 10633513
chr7 9773371
chr8 8253251
chr9 8305611
chr10 8937530
chr11 10179992
chr12 9180014
chr13 5069716
chr14 6381834
chr15 5894855
chr16 7002416
chr17 8882666
chr18 4318369
chr19 7947664
chr20 4966088
chr21 2345174
chr22 3961874
chrX 3972417
chrY 270607
GL000009.2 827
GL000194.1 3641
GL000195.1 5555
GL000205.2 12531
GL000213.1 66
GL000218.1 1664
GL000219.1 8747
KI270711.1 880
KI270713.1 4773
KI270721.1 165
KI270726.1 19
KI270727.1 180
KI270728.1 539
KI270731.1 91
KI270734.1 330

Fragment lengths

fragments min max mean median
fragments 189432528 1 5040 195.62 161
global fragment-length histogram

Files

Filename Size md5
06043bb557ca604218ca7f91581e83d93a4625e7.gz 1.77 GB c916d1b36a9a60d2f231c9356642b5be
06043bb557ca604218ca7f91581e83d93a4625e7.gz.tbi 1005.64 KB 76132029429e2a710baad076c0c2310c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9fd463a228a92622b20289eceee46879
statistics/