Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0704a0c4dfc17e671731ca261bd8e38d613155a3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0704a0c4dfc17e671731ca261bd8e38d613155a3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0704a0c4dfc17e671731ca261bd8e38d613155a3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1279_B07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCCGGAATCACCAATA-1279_B07, GTTCCTTCAGTTTGTG-1279_B07, GAGGACTAGGCTACTG-1279_B07, TTTGTCTAGCCTGGTA-1279_B07, AAGCCTGTCGTAACGT-1279_B07 (top 5 of 2118 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
81,538,199
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 81538199
chr1 7783789
chr2 6129424
chr3 5031112
chr4 3644026
chr5 4208404
chr6 4430775
chr7 4072201
chr8 3335753
chr9 3724306
chr10 3999813
chr11 4568016
chr12 3820331
chr13 1993630
chr14 2770943
chr15 2648795
chr16 3094512
chr17 4194493
chr18 1708880
chr19 3696040
chr20 2208795
chr21 954193
chr22 1868214
chrX 1548539
chrY 87138
GL000009.2 371
GL000194.1 2746
GL000195.1 2685
GL000205.2 3000
GL000213.1 11
GL000218.1 902
GL000219.1 2863
KI270711.1 229
KI270713.1 2762
KI270721.1 37
KI270726.1 3
KI270727.1 90
KI270728.1 86
KI270731.1 40
KI270734.1 252

Fragment lengths

fragments min max mean median
fragments 81538199 1 5042 209.65 175
global fragment-length histogram

Files

Filename Size md5
0704a0c4dfc17e671731ca261bd8e38d613155a3.gz 749.79 MB 7167423e2260ae7de7e24187e1593258
0704a0c4dfc17e671731ca261bd8e38d613155a3.gz.tbi 705.68 KB 88c5cc3274c5268e3fd0fbb9dafd03af
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB cbf21efcff5da5c1a245eb76d912a065
statistics/