Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0ad387162a225d22193a66dd2f692dfae34ffd7dcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0ad387162a225d22193a66dd2f692dfae34ffd7d
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0ad387162a225d22193a66dd2f692dfae34ffd7d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2511_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTTCTCATCGGTTTCC-2511_B02, TTTGTCCCATACCCGG-2511_B02, TGGTCAAGTTTGTGGA-2511_B02, GGTGCTTCAATACTGT-2511_B02, CGATTCCTCTTGAGCG-2511_B02 (top 5 of 5376 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
231,056,569
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 231056569
chr1 19685808
chr2 18910978
chr3 16016300
chr4 13522028
chr5 13770806
chr6 13511278
chr7 12629751
chr8 11124182
chr9 9407609
chr10 10686537
chr11 11878415
chr12 11347389
chr13 7059409
chr14 7624701
chr15 6839162
chr16 7309122
chr17 8395587
chr18 5769704
chr19 6739098
chr20 5499040
chr21 2785935
chr22 3919845
chrX 6564626
chrY 14403
GL000009.2 1608
GL000194.1 3913
GL000195.1 4870
GL000205.2 12400
GL000213.1 174
GL000218.1 2820
GL000219.1 12554
KI270711.1 439
KI270713.1 2936
KI270721.1 134
KI270726.1 21
KI270727.1 655
KI270728.1 1652
KI270731.1 158
KI270734.1 522

Fragment lengths

fragments min max mean median
fragments 231056569 1 5040 188.38 162
global fragment-length histogram

Files

Filename Size md5
0ad387162a225d22193a66dd2f692dfae34ffd7d.gz 2.27 GB 72ed598f18781a9470155559f692983a
0ad387162a225d22193a66dd2f692dfae34ffd7d.gz.tbi 1.15 MB 2ffed67275d8dab498adbb02867199ed
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e16ba02edd932ce45646d1dc7e922ba2
statistics/