Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0bde255f925875e8c2710673628ac8259c4e44eccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0bde255f925875e8c2710673628ac8259c4e44ec
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0bde255f925875e8c2710673628ac8259c4e44ec
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2368_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TACGTACAGGTTAGAG-2368_B02, TAGCGGCTCGATTTAG-2368_B02, CTCCGGACAGCAAATA-2368_B02, ATCTATGAGTAAGTCC-2368_B02, CCACTTGGTTGGTTAG-2368_B02 (top 5 of 4742 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
253,576,616
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 253576616
chr1 22779480
chr2 19651969
chr3 16449154
chr4 12839561
chr5 13767164
chr6 13984420
chr7 13417653
chr8 11326150
chr9 10638763
chr10 11879467
chr11 13537806
chr12 12495992
chr13 6813289
chr14 8584852
chr15 7938996
chr16 9503522
chr17 11337299
chr18 5792063
chr19 10097807
chr20 6759876
chr21 2986001
chr22 5302538
chrX 5300098
chrY 345215
GL000009.2 783
GL000194.1 4818
GL000195.1 7448
GL000205.2 14317
GL000213.1 68
GL000218.1 1985
GL000219.1 10360
KI270711.1 642
KI270713.1 5205
KI270721.1 231
KI270726.1 29
KI270727.1 164
KI270728.1 677
KI270731.1 186
KI270734.1 568

Fragment lengths

fragments min max mean median
fragments 253576616 1 5041 183.24 158
global fragment-length histogram

Files

Filename Size md5
0bde255f925875e8c2710673628ac8259c4e44ec.gz 2.35 GB 940234a419ac6ac76c86b60736f1224b
0bde255f925875e8c2710673628ac8259c4e44ec.gz.tbi 1.15 MB 450c4081b2c9a43f5fd2c8b12d2e25b2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a4732488479829e12877fc352555e9d9
statistics/