Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0c3c96794972b6c4324ca5724387eaac3e92772ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0c3c96794972b6c4324ca5724387eaac3e92772c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0c3c96794972b6c4324ca5724387eaac3e92772c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2235_F03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGTTGGTGTAAAGCAA-2235_F03, CATCAATCAATCGCAC-2235_F03, TGTGCGGGTACCGGAT-2235_F03, GCGCGATTCCATCAGG-2235_F03, GCTTTGTGTATACTGG-2235_F03 (top 5 of 4494 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
145,070,584
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 145070584
chr1 13091304
chr2 11244895
chr3 9137816
chr4 7192380
chr5 7692441
chr6 7908552
chr7 7465860
chr8 6399411
chr9 6397128
chr10 6903997
chr11 7749113
chr12 6894412
chr13 3866958
chr14 4842921
chr15 4488585
chr16 5339230
chr17 6609802
chr18 3317134
chr19 5814115
chr20 3845970
chr21 1803077
chr22 3023537
chrX 3993090
chrY 14118
GL000009.2 945
GL000194.1 5599
GL000195.1 5081
GL000205.2 9106
GL000213.1 144
GL000218.1 1492
GL000219.1 6319
KI270711.1 388
KI270713.1 2438
KI270721.1 199
KI270726.1 15
KI270727.1 569
KI270728.1 1971
KI270731.1 173
KI270734.1 299

Fragment lengths

fragments min max mean median
fragments 145070584 1 5023 139.68 113
global fragment-length histogram

Files

Filename Size md5
0c3c96794972b6c4324ca5724387eaac3e92772c.gz 1.39 GB a1dde0d473bd1fbb9f89b93c27e9cdb1
0c3c96794972b6c4324ca5724387eaac3e92772c.gz.tbi 899.11 KB dc59036f7bb6155c37fab35eb3649647
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f6f513f0497870122757b85b095a0d82
statistics/