Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0cb93024172c5b8b258cb5dee46df02a82242863content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0cb93024172c5b8b258cb5dee46df02a82242863
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0cb93024172c5b8b258cb5dee46df02a82242863
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2433_1_G04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGATTGCGTTCGGTAA-2433_1_G04, CCCTAATGTAACCACA-2433_1_G04, TTTAGCTTCACCATTT-2433_1_G04, ATTCCGGAGACAGGCG-2433_1_G04, GATGCATTCAGCTAAC-2433_1_G04 (top 5 of 4558 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
153,818,091
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 153818091
chr1 13685104
chr2 11965600
chr3 9893640
chr4 8043303
chr5 8550245
chr6 8693851
chr7 8094188
chr8 6989165
chr9 6666526
chr10 7143992
chr11 8160980
chr12 7383218
chr13 4299630
chr14 5129939
chr15 4583883
chr16 5459863
chr17 6806299
chr18 3652678
chr19 6089242
chr20 3964357
chr21 1886498
chr22 3018162
chrX 3385645
chrY 239090
GL000009.2 933
GL000194.1 3176
GL000195.1 4769
GL000205.2 9808
GL000213.1 64
GL000218.1 1577
GL000219.1 6837
KI270711.1 554
KI270713.1 3966
KI270721.1 177
KI270726.1 32
KI270727.1 154
KI270728.1 574
KI270731.1 79
KI270734.1 293

Fragment lengths

fragments min max mean median
fragments 153818091 1 5041 165.18 141
global fragment-length histogram

Files

Filename Size md5
0cb93024172c5b8b258cb5dee46df02a82242863.gz 1.44 GB f4a6e798a708ae84469fcac61a67ac1b
0cb93024172c5b8b258cb5dee46df02a82242863.gz.tbi 918.48 KB 1c6fee556ea2620b9c8e2296f280269f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e17ccbedc0f04995ba51cca0dc96d420
statistics/