Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0f00e9a2defd21a6c6a5e98687f93df14a272194content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 0f00e9a2defd21a6c6a5e98687f93df14a272194
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0f00e9a2defd21a6c6a5e98687f93df14a272194
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2233_1_D02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTCTATGCAATTTAGC-2233_1_D02, TTTAAGGTCTTGCTAT-2233_1_D02, CTTATGTTCGCAACAT-2233_1_D02, TGGACCGGTGTGCACG-2233_1_D02, CTCACAACAAAGCGCA-2233_1_D02 (top 5 of 3550 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
163,018,220
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 163018220
chr1 14909158
chr2 12530325
chr3 10251679
chr4 7679786
chr5 8588616
chr6 8890856
chr7 8447908
chr8 7058339
chr9 7168016
chr10 7843974
chr11 8875768
chr12 7890228
chr13 4155413
chr14 5447669
chr15 5129674
chr16 6073991
chr17 7748326
chr18 3601262
chr19 6850364
chr20 4426771
chr21 1934722
chr22 3482275
chrX 3992302
chrY 7876
GL000009.2 574
GL000194.1 4747
GL000195.1 5687
GL000205.2 8423
GL000213.1 78
GL000218.1 1168
GL000219.1 6916
KI270711.1 340
KI270713.1 2650
KI270721.1 191
KI270726.1 20
KI270727.1 543
KI270728.1 1160
KI270731.1 178
KI270734.1 247

Fragment lengths

fragments min max mean median
fragments 163018220 1 5023 161.01 151
global fragment-length histogram

Files

Filename Size md5
0f00e9a2defd21a6c6a5e98687f93df14a272194.gz 1.5 GB 37383ff0f30a3f418d6284cfa14d2b10
0f00e9a2defd21a6c6a5e98687f93df14a272194.gz.tbi 933.08 KB 756fc7edf1690b352a193227eb22423a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 57e2a8de441457077234389e43c44ce3
statistics/