Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/10561fec5702b576727b687f4ad82ddcc3392312content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 10561fec5702b576727b687f4ad82ddcc3392312
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 10561fec5702b576727b687f4ad82ddcc3392312
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2495_A08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGTTGCGTCGGTTTCC-2495_A08, GATGAGGGTGATTACG-2495_A08, GTTAGGCGTATTACCC-2495_A08, TGAAGCAAGCAAGACA-2495_A08, CAGGGCTTCCTTGAGG-2495_A08 (top 5 of 4526 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
241,328,445
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 241328445
chr1 21700186
chr2 18881254
chr3 15590110
chr4 12150959
chr5 13034937
chr6 13302262
chr7 12943977
chr8 10833383
chr9 10127005
chr10 11295342
chr11 12857142
chr12 11858433
chr13 6465340
chr14 8139437
chr15 7574519
chr16 9082934
chr17 10741748
chr18 5468372
chr19 9413295
chr20 6474340
chr21 2841118
chr22 5158263
chrX 4988445
chrY 356292
GL000009.2 1587
GL000194.1 4032
GL000195.1 4812
GL000205.2 12125
GL000213.1 4
GL000218.1 4797
GL000219.1 14529
KI270711.1 899
KI270713.1 4388
KI270721.1 204
KI270726.1 34
KI270727.1 297
KI270728.1 625
KI270731.1 163
KI270734.1 856

Fragment lengths

fragments min max mean median
fragments 241328445 1 5039 174.06 159
global fragment-length histogram

Files

Filename Size md5
10561fec5702b576727b687f4ad82ddcc3392312.gz 2.25 GB 213a2fd14507e48f342277b858b54bbd
10561fec5702b576727b687f4ad82ddcc3392312.gz.tbi 1.11 MB 6641ddfd0cbd63f43c710daf79af0be8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f6170c2ca5060e10ef8d788c441890e4
statistics/