Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/10d00cb33bb4f4f2c8423108179cec82390ec10econtent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 10d00cb33bb4f4f2c8423108179cec82390ec10e
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 10d00cb33bb4f4f2c8423108179cec82390ec10e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1042_A06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGTGTGTCAGGCATGA-1042_A06, TGTGATCAGTGAGCGG-1042_A06, TGCTTGTGTTGCAATG-1042_A06, TCAGCCTTCCTCAGTC-1042_A06, TTGTCCGGTTCTTTAG-1042_A06 (top 5 of 4416 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
219,273,382
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 219273382
chr1 19394310
chr2 17554262
chr3 14621979
chr4 11653858
chr5 12439990
chr6 12243502
chr7 11843841
chr8 10271091
chr9 8979523
chr10 10322991
chr11 11505770
chr12 10739087
chr13 6175661
chr14 7291345
chr15 6784640
chr16 7812706
chr17 9064832
chr18 5141888
chr19 7502482
chr20 5884053
chr21 2539077
chr22 4332928
chrX 4806195
chrY 330311
GL000009.2 661
GL000194.1 4193
GL000195.1 4257
GL000205.2 10834
GL000213.1 52
GL000218.1 2725
GL000219.1 9102
KI270711.1 406
KI270713.1 1546
KI270721.1 104
KI270726.1 9
KI270727.1 174
KI270728.1 2025
KI270731.1 250
KI270734.1 722

Fragment lengths

fragments min max mean median
fragments 219273382 1 5022 177.54 162
global fragment-length histogram

Files

Filename Size md5
10d00cb33bb4f4f2c8423108179cec82390ec10e.gz 2.1 GB e7c0a45da8bbde4c61f748bf939445c5
10d00cb33bb4f4f2c8423108179cec82390ec10e.gz.tbi 1.09 MB b20d78d63763d5d97fc08617755a576d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB aa8897e2def5470c3b9dc7f1ec6acbd2
statistics/