Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/10d57aeed611a5e3383f249bf760925cc67eef14content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 10d57aeed611a5e3383f249bf760925cc67eef14
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 10d57aeed611a5e3383f249bf760925cc67eef14
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2530_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTGATGAAGACAAACG-2530_A02, TGTCCTTCAATCCCTT-2530_A02, AGGATGCAGGCCATCA-2530_A02, CGTGCTGCAAAGGTAC-2530_A02, AGGACGTAGCATTATG-2530_A02 (top 5 of 2495 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
116,611,320
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 116611320
chr1 10602042
chr2 9024833
chr3 7528415
chr4 5758906
chr5 6283081
chr6 6421390
chr7 6065049
chr8 5168103
chr9 5092546
chr10 5589125
chr11 6253445
chr12 5554117
chr13 3124994
chr14 3906531
chr15 3637437
chr16 4209837
chr17 5244835
chr18 2693591
chr19 4496202
chr20 3084316
chr21 1410735
chr22 2432866
chrX 2993262
chrY 9316
GL000009.2 994
GL000194.1 2268
GL000195.1 2994
GL000205.2 6801
GL000213.1 98
GL000218.1 1710
GL000219.1 6506
KI270711.1 408
KI270713.1 2182
KI270721.1 135
KI270726.1 10
KI270727.1 609
KI270728.1 1215
KI270731.1 82
KI270734.1 334

Fragment lengths

fragments min max mean median
fragments 116611320 1 5039 183.05 158
global fragment-length histogram

Files

Filename Size md5
10d57aeed611a5e3383f249bf760925cc67eef14.gz 1.09 GB 46429f07d7bcf894e244f31b390b4ecf
10d57aeed611a5e3383f249bf760925cc67eef14.gz.tbi 806.57 KB ecacd35ebefef83058fc0f21ed21a586
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c9d2be7ef63c27a20516787b111afeb8
statistics/