Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/12af51e2b66778a956ef18abf9cf4fb2ec0db070content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 12af51e2b66778a956ef18abf9cf4fb2ec0db070
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 12af51e2b66778a956ef18abf9cf4fb2ec0db070
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2341_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTAATCGAGCATTATG-2341_C02, CCACTTGGTTGGTGAC-2341_C02, CTTTCTTGTGTGCACG-2341_C02, CAGGTTAGTATGGTGC-2341_C02, AAGAACAGTGTTGCAA-2341_C02 (top 5 of 4353 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
231,421,034
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 231421034
chr1 20099007
chr2 18449817
chr3 15349506
chr4 12636047
chr5 13226426
chr6 12938803
chr7 12371137
chr8 10926119
chr9 9596781
chr10 10869048
chr11 11959292
chr12 11246975
chr13 6605968
chr14 7660687
chr15 6905526
chr16 8037623
chr17 9201087
chr18 5621534
chr19 7662920
chr20 5942607
chr21 2729358
chr22 4369248
chrX 6935858
chrY 19424
GL000009.2 814
GL000194.1 5091
GL000195.1 5783
GL000205.2 15172
GL000213.1 90
GL000218.1 3912
GL000219.1 18851
KI270711.1 570
KI270713.1 1809
KI270721.1 121
KI270726.1 10
KI270727.1 430
KI270728.1 6962
KI270731.1 177
KI270734.1 444

Fragment lengths

fragments min max mean median
fragments 231421034 1 5031 172.22 157
global fragment-length histogram

Files

Filename Size md5
12af51e2b66778a956ef18abf9cf4fb2ec0db070.gz 2.21 GB d8a8e8a80cd067981c3fdc21764a3afa
12af51e2b66778a956ef18abf9cf4fb2ec0db070.gz.tbi 1.16 MB e2f11967214ef118b4c51f180fbe8f1e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 42b836fa9af8fc6542d38514d0b60ebe
statistics/