Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/13d2c162820f6a063af8d4c3f3acac3f82cfefdfcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 13d2c162820f6a063af8d4c3f3acac3f82cfefdf
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 13d2c162820f6a063af8d4c3f3acac3f82cfefdf
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2235_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTTGGAGCAGCAACAG-2235_B03, CAGGGTGAGTATCGCG-2235_B03, GGGTGTTGTATTCGTC-2235_B03, GTAGGTGCAGCCTAAC-2235_B03, CATAGTCAGCAAGATG-2235_B03 (top 5 of 6603 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
208,088,113
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 208088113
chr1 18531049
chr2 16140046
chr3 13300780
chr4 10519096
chr5 11324683
chr6 11400983
chr7 10963615
chr8 9344397
chr9 8786000
chr10 9805301
chr11 11064231
chr12 10024439
chr13 5608488
chr14 6949712
chr15 6458361
chr16 7673222
chr17 9146217
chr18 4766339
chr19 8066280
chr20 5583287
chr21 2500068
chr22 4332441
chrX 5731785
chrY 18506
GL000009.2 1238
GL000194.1 8306
GL000195.1 6923
GL000205.2 12575
GL000213.1 140
GL000218.1 2149
GL000219.1 9666
KI270711.1 376
KI270713.1 2977
KI270721.1 287
KI270726.1 21
KI270727.1 607
KI270728.1 2763
KI270731.1 313
KI270734.1 446

Fragment lengths

fragments min max mean median
fragments 208088113 1 5040 140.44 116
global fragment-length histogram

Files

Filename Size md5
13d2c162820f6a063af8d4c3f3acac3f82cfefdf.gz 2.01 GB adb5e404580700d101f5d19c76e83564
13d2c162820f6a063af8d4c3f3acac3f82cfefdf.gz.tbi 1.06 MB 1411aea1ada0faf1ead1d6d978de40bd
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 7cc456e7c057a0eb5364df7836236050
statistics/