Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/145979574e93695f7931219348f8b06d0f5cd6b4content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 145979574e93695f7931219348f8b06d0f5cd6b4
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 145979574e93695f7931219348f8b06d0f5cd6b4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2269_1_E06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTGCAAGCATAGACCC-2269_1_E06, CTAGCTGAGCTTTGGG-2269_1_E06, GGCTATGTCTTGTCTG-2269_1_E06, CAGGACACAAGTAAGC-2269_1_E06, GCTGCAATCCTAGTTT-2269_1_E06 (top 5 of 1093 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
51,515,665
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 51515665
chr1 4685791
chr2 3900143
chr3 3255712
chr4 2484758
chr5 2729101
chr6 2822242
chr7 2658098
chr8 2246149
chr9 2275443
chr10 2493715
chr11 2787359
chr12 2447527
chr13 1333057
chr14 1732847
chr15 1651773
chr16 1911065
chr17 2404569
chr18 1161229
chr19 2075535
chr20 1388816
chr21 619249
chr22 1094529
chrX 1340468
chrY 4068
GL000009.2 303
GL000194.1 2032
GL000195.1 1988
GL000205.2 3279
GL000213.1 45
GL000218.1 539
GL000219.1 2269
KI270711.1 103
KI270713.1 850
KI270721.1 43
KI270726.1 7
KI270727.1 212
KI270728.1 585
KI270731.1 50
KI270734.1 117

Fragment lengths

fragments min max mean median
fragments 51515665 1 5029 161.59 144
global fragment-length histogram

Files

Filename Size md5
145979574e93695f7931219348f8b06d0f5cd6b4.gz 483.26 MB c4ad762d21ca9a560b24d6aa5995ef28
145979574e93695f7931219348f8b06d0f5cd6b4.gz.tbi 633.27 KB d9792dc050991bbca1dcfdc906d6d6a8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 811951d2a9b5d5d23609bc75f810ab1a
statistics/