Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/181c2031341a74bdcb4f29ff2d79b04d9759187econtent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 181c2031341a74bdcb4f29ff2d79b04d9759187e
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 181c2031341a74bdcb4f29ff2d79b04d9759187e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2305_F01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTGCAAGGTGGATTAT-2305_F01, AATTGCTCAATGAGGT-2305_F01, CTATTCAGTTTACTTG-2305_F01, AGAGGATGTGTAATAC-2305_F01, TTAGACTCAAGGTCCT-2305_F01 (top 5 of 3832 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
247,442,039
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 247442039
chr1 21575449
chr2 19690530
chr3 16491312
chr4 13402865
chr5 14066983
chr6 13883779
chr7 13405312
chr8 11390210
chr9 10002277
chr10 11567726
chr11 12872051
chr12 12098707
chr13 6954784
chr14 8308894
chr15 7585716
chr16 8717775
chr17 9993319
chr18 5857957
chr19 8504308
chr20 6381780
chr21 2916831
chr22 4754218
chrX 6933558
chrY 16293
GL000009.2 648
GL000194.1 5942
GL000195.1 6428
GL000205.2 16807
GL000213.1 68
GL000218.1 4722
GL000219.1 24217
KI270711.1 567
KI270713.1 2104
KI270721.1 110
KI270726.1 17
KI270727.1 399
KI270728.1 6743
KI270731.1 223
KI270734.1 410

Fragment lengths

fragments min max mean median
fragments 247442039 1 5038 179.09 159
global fragment-length histogram

Files

Filename Size md5
181c2031341a74bdcb4f29ff2d79b04d9759187e.gz 2.32 GB 3522f0e7a463a928db97e96db58860bb
181c2031341a74bdcb4f29ff2d79b04d9759187e.gz.tbi 1.17 MB 13a50498e6db7f4e9f5338d8d1aa9af2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 3c89bd86403a26de46eacc6096b5b3d7
statistics/