Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1965a6e8d3862f032a8830db0fd306aa58f62f67content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 1965a6e8d3862f032a8830db0fd306aa58f62f67
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1965a6e8d3862f032a8830db0fd306aa58f62f67
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2256_A03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGAATCTGTGTGCACG-2256_A03, GAGTCAAAGAGGAAGG-2256_A03, ATGTTTGAGCATGTCG-2256_A03, CAGGTCCAGGCATGTT-2256_A03, GTACTGGTCGTTATAG-2256_A03 (top 5 of 5213 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
361,057,301
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 361057301
chr1 32191082
chr2 28322374
chr3 23497972
chr4 18536415
chr5 19869109
chr6 20067133
chr7 19060959
chr8 16311822
chr9 15075170
chr10 16905232
chr11 19181762
chr12 17462271
chr13 9856917
chr14 12066933
chr15 11166896
chr16 13107015
chr17 15806081
chr18 8245801
chr19 13649529
chr20 9556905
chr21 4270574
chr22 7334889
chrX 9420484
chrY 21099
GL000009.2 1612
GL000194.1 11818
GL000195.1 11247
GL000205.2 18353
GL000213.1 222
GL000218.1 2857
GL000219.1 15630
KI270711.1 605
KI270713.1 5051
KI270721.1 335
KI270726.1 29
KI270727.1 786
KI270728.1 3201
KI270731.1 460
KI270734.1 671

Fragment lengths

fragments min max mean median
fragments 361057301 1 5040 196.88 165
global fragment-length histogram

Files

Filename Size md5
1965a6e8d3862f032a8830db0fd306aa58f62f67.gz 3.33 GB e8380ced9acf345156c05efbc3d2ce2c
1965a6e8d3862f032a8830db0fd306aa58f62f67.gz.tbi 1.4 MB a5ac6d7e45dd4c046042e5b9c5b9b40c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a6f5dbb619b662533014551b15521f7b
statistics/