Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1a1cd2349f728451320c9e7dd535435a918960cacontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 1a1cd2349f728451320c9e7dd535435a918960ca
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1a1cd2349f728451320c9e7dd535435a918960ca
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2370_A03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGAAGGTGTAAATTGC-2370_A03, TAGTAAGCAGCCGCTA-2370_A03, TAGTGGCGTTGTTGGA-2370_A03, TGAGGAGGTTCACCCA-2370_A03, TGAGCAAAGGTCGAGG-2370_A03 (top 5 of 5073 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
271,977,454
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 271977454
chr1 24205069
chr2 21182828
chr3 17688893
chr4 14055241
chr5 15048882
chr6 15241175
chr7 14595773
chr8 12218135
chr9 11215045
chr10 12666560
chr11 14432286
chr12 13417967
chr13 7295073
chr14 9185883
chr15 8489324
chr16 10199088
chr17 11935722
chr18 6251745
chr19 10522189
chr20 7227263
chr21 3167836
chr22 5668108
chrX 5646197
chrY 368138
GL000009.2 765
GL000194.1 5331
GL000195.1 7866
GL000205.2 17148
GL000213.1 91
GL000218.1 2180
GL000219.1 11738
KI270711.1 591
KI270713.1 5285
KI270721.1 222
KI270726.1 35
KI270727.1 171
KI270728.1 842
KI270731.1 195
KI270734.1 574

Fragment lengths

fragments min max mean median
fragments 271977454 1 5038 209.13 169
global fragment-length histogram

Files

Filename Size md5
1a1cd2349f728451320c9e7dd535435a918960ca.gz 2.53 GB a85e09d5ec81e37c3c58086562591914
1a1cd2349f728451320c9e7dd535435a918960ca.gz.tbi 1.19 MB d89302b1ed89c352d0c9587aa3ea9de4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 85edc8255238ccaa24952344860abaaa
statistics/