Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1bea11cc30d98019a065e7756045183e0001749acontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 1bea11cc30d98019a065e7756045183e0001749a
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1bea11cc30d98019a065e7756045183e0001749a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2253_B01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTCCACGGTTGAAGCC-2253_B01, TGTATCGCAGGCAAGC-2253_B01, GCTAGTGTCGTGCTTC-2253_B01, TGTCCTGGTTGTAAAC-2253_B01, AAACAGCCAATAACGA-2253_B01 (top 5 of 4121 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
302,873,314
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 302873314
chr1 26615016
chr2 23516080
chr3 19753160
chr4 15842205
chr5 16674684
chr6 17035637
chr7 16110669
chr8 13699904
chr9 12501475
chr10 14080928
chr11 16055014
chr12 14832820
chr13 8257428
chr14 10184181
chr15 9353439
chr16 11105728
chr17 13040687
chr18 6944049
chr19 11441054
chr20 7894283
chr21 3596704
chr22 6231359
chrX 8022086
chrY 19185
GL000009.2 1331
GL000194.1 11214
GL000195.1 9551
GL000205.2 16315
GL000213.1 172
GL000218.1 2650
GL000219.1 14683
KI270711.1 474
KI270713.1 4381
KI270721.1 281
KI270726.1 23
KI270727.1 634
KI270728.1 2927
KI270731.1 381
KI270734.1 522

Fragment lengths

fragments min max mean median
fragments 302873314 1 5040 194.38 163
global fragment-length histogram

Files

Filename Size md5
1bea11cc30d98019a065e7756045183e0001749a.gz 2.78 GB d4c1b4a6369798698350c3923872bf17
1bea11cc30d98019a065e7756045183e0001749a.gz.tbi 1.27 MB bc5076a0a7b6fbcfc2ddf13640a2fead
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b932f4801f9e76a729dc712301a45bf6
statistics/