Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1e13dfded661c465568e19b948a69dee97a581d1content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 1e13dfded661c465568e19b948a69dee97a581d1
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1e13dfded661c465568e19b948a69dee97a581d1
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2283_B08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CATAACGGTCATGCCC-2283_B08, CCATAGCCAACGTGCT-2283_B08, TATGGTCAGTAAGGGC-2283_B08, ACACTAATCGGTTCCT-2283_B08, TGAGGAGGTGCGCAAT-2283_B08 (top 5 of 4601 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
264,182,990
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 264182990
chr1 23554058
chr2 20524583
chr3 17081798
chr4 13558898
chr5 14451253
chr6 14624562
chr7 13944716
chr8 11972518
chr9 11040398
chr10 12360768
chr11 13991389
chr12 12781924
chr13 7165596
chr14 8815611
chr15 8161496
chr16 9671827
chr17 11661744
chr18 5999871
chr19 10249324
chr20 7005222
chr21 3107286
chr22 5437803
chrX 6948642
chrY 16205
GL000009.2 1169
GL000194.1 8942
GL000195.1 9512
GL000205.2 13385
GL000213.1 156
GL000218.1 2125
GL000219.1 11758
KI270711.1 405
KI270713.1 3809
KI270721.1 294
KI270726.1 23
KI270727.1 662
KI270728.1 2362
KI270731.1 326
KI270734.1 570

Fragment lengths

fragments min max mean median
fragments 264182990 1 5035 178.99 159
global fragment-length histogram

Files

Filename Size md5
1e13dfded661c465568e19b948a69dee97a581d1.gz 2.45 GB 5ba4493e3ba9ff67612543eb24dfce61
1e13dfded661c465568e19b948a69dee97a581d1.gz.tbi 1.18 MB 4d2c371cfe23b52a4ccb25bba88ba697
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e37986a9544afb05a03d32a842c41dc6
statistics/