Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1e9b09156ab1a6545caf741f5b634afda2d8e093content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 1e9b09156ab1a6545caf741f5b634afda2d8e093
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1e9b09156ab1a6545caf741f5b634afda2d8e093
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2229_D06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GATTGCGTCACAGGAA-2229_D06, TACTGCACAACGTGCT-2229_D06, ATGACCAGTAACCTAG-2229_D06, GGCAAATCACGAATCC-2229_D06, GTGTCCAAGTTACCGG-2229_D06 (top 5 of 4940 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
306,417,528
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 306417528
chr1 27428623
chr2 23903990
chr3 19823369
chr4 15602886
chr5 16723473
chr6 16930977
chr7 16233839
chr8 13748648
chr9 12927496
chr10 14371349
chr11 16387494
chr12 15000452
chr13 8323800
chr14 10264176
chr15 9446407
chr16 11220487
chr17 13420269
chr18 7048481
chr19 11723910
chr20 8075138
chr21 3661292
chr22 6337663
chrX 7735693
chrY 16621
GL000009.2 1254
GL000194.1 10635
GL000195.1 9265
GL000205.2 14648
GL000213.1 169
GL000218.1 2577
GL000219.1 13149
KI270711.1 545
KI270713.1 4341
KI270721.1 362
KI270726.1 22
KI270727.1 824
KI270728.1 2301
KI270731.1 372
KI270734.1 531

Fragment lengths

fragments min max mean median
fragments 306417528 1 5034 162.1 150
global fragment-length histogram

Files

Filename Size md5
1e9b09156ab1a6545caf741f5b634afda2d8e093.gz 2.83 GB 1d318fc66d39b8f41f860e06023fa3d3
1e9b09156ab1a6545caf741f5b634afda2d8e093.gz.tbi 1.27 MB 288463f9c104ab48a00e95775025066c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c0c5fac3e045b0782805454f1161a29d
statistics/