Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/21b13da435317922136516f4ea4e27943907579ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 21b13da435317922136516f4ea4e27943907579c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 21b13da435317922136516f4ea4e27943907579c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2295_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCGAGTGAGACAGGCG-2295_C02, GGCGGTAAGCCTGTGA-2295_C02, CACAGGGAGGATGATG-2295_C02, GAACACAAGTAGGCGG-2295_C02, TATCGCGAGGAGGTTA-2295_C02 (top 5 of 2490 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
123,846,661
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 123846661
chr1 11242620
chr2 9690254
chr3 7972297
chr4 6189841
chr5 6800739
chr6 6844905
chr7 6489345
chr8 5535894
chr9 5325956
chr10 5892823
chr11 6604236
chr12 5925290
chr13 3350205
chr14 4162038
chr15 3839834
chr16 4398246
chr17 5509978
chr18 2840323
chr19 4704951
chr20 3268350
chr21 1446343
chr22 2524961
chrX 3249681
chrY 7791
GL000009.2 332
GL000194.1 2413
GL000195.1 3462
GL000205.2 6880
GL000213.1 33
GL000218.1 1623
GL000219.1 9984
KI270711.1 361
KI270713.1 1400
KI270721.1 52
KI270726.1 2
KI270727.1 290
KI270728.1 2610
KI270731.1 80
KI270734.1 238

Fragment lengths

fragments min max mean median
fragments 123846661 1 5036 183.25 162
global fragment-length histogram

Files

Filename Size md5
21b13da435317922136516f4ea4e27943907579c.gz 1.14 GB 5511f57d33821448d6a4e6a6c0da2687
21b13da435317922136516f4ea4e27943907579c.gz.tbi 826.51 KB 4b025f0c0c68a05e1a5263c074ac65a0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 27d98a079b8e9e67abe3d715a00bd8cb
statistics/