Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/22653d611d9edbe704eab070521891d5864eef82content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 22653d611d9edbe704eab070521891d5864eef82
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 22653d611d9edbe704eab070521891d5864eef82
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2526_E01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGAACCTGTTATGTGG-2526_E01, TATCCAGCATAACGGG-2526_E01, AAGGTCAAGAGAGCCG-2526_E01, AATCAGGAGCATGCAT-2526_E01, AATTAGCGTCCGTAGG-2526_E01 (top 5 of 5465 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
200,107,100
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 200107100
chr1 17662344
chr2 15723206
chr3 13103847
chr4 10501871
chr5 11069287
chr6 11012303
chr7 10709391
chr8 9101621
chr9 8353192
chr10 9355966
chr11 10541674
chr12 9749696
chr13 5456167
chr14 6676845
chr15 6212927
chr16 7279656
chr17 8476899
chr18 4650213
chr19 7249607
chr20 5226726
chr21 2388429
chr22 4166638
chrX 5378149
chrY 15387
GL000009.2 1590
GL000194.1 4427
GL000195.1 4157
GL000205.2 12223
GL000213.1 179
GL000218.1 3011
GL000219.1 11787
KI270711.1 501
KI270713.1 2905
KI270721.1 212
KI270726.1 25
KI270727.1 693
KI270728.1 2605
KI270731.1 189
KI270734.1 555

Fragment lengths

fragments min max mean median
fragments 200107100 1 5037 183.94 160
global fragment-length histogram

Files

Filename Size md5
22653d611d9edbe704eab070521891d5864eef82.gz 1.95 GB 3bb06cb4eaf18c7fa722ebf34b34642a
22653d611d9edbe704eab070521891d5864eef82.gz.tbi 1.04 MB 70ac80bc3bed30a24b2c1d6c2c297f0f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 94f6f062c8551e9244ff22cfa7642b1f
statistics/