Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/22ef06890ad0779f6fe8a4260284344f37834a95content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 22ef06890ad0779f6fe8a4260284344f37834a95
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 22ef06890ad0779f6fe8a4260284344f37834a95
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2275_E02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AATGTCCAGCCACAAT-2275_E02, AAAGGACGTGTGCACG-2275_E02, CGCTTACTCTTAGGGT-2275_E02, TTACCGTGTGAATCGC-2275_E02, GTAGGTGCAGCAACCT-2275_E02 (top 5 of 6291 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
330,392,399
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 330392399
chr1 28879969
chr2 25753611
chr3 21407562
chr4 17393765
chr5 18268163
chr6 18485108
chr7 17629755
chr8 14913846
chr9 13654496
chr10 15232023
chr11 17545508
chr12 16133366
chr13 9098481
chr14 11046535
chr15 10048123
chr16 12090647
chr17 14009768
chr18 7698639
chr19 12449299
chr20 8558393
chr21 3940690
chr22 6741637
chrX 9305225
chrY 28343
GL000009.2 1822
GL000194.1 14306
GL000195.1 10908
GL000205.2 21056
GL000213.1 213
GL000218.1 3582
GL000219.1 16242
KI270711.1 541
KI270713.1 4718
KI270721.1 357
KI270726.1 41
KI270727.1 892
KI270728.1 3730
KI270731.1 456
KI270734.1 583

Fragment lengths

fragments min max mean median
fragments 330392399 1 5041 179.48 157
global fragment-length histogram

Files

Filename Size md5
22ef06890ad0779f6fe8a4260284344f37834a95.gz 3.12 GB 48029b778bf95d15f2d10fe953d2a9c4
22ef06890ad0779f6fe8a4260284344f37834a95.gz.tbi 1.36 MB ff96184648a8458ecce5a4c8ac05790c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1f5224cae96c1c990bd66156906b26c7
statistics/