Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/237fca61a138a6c86f149b0271a293f75f8e4a0bcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 237fca61a138a6c86f149b0271a293f75f8e4a0b
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 237fca61a138a6c86f149b0271a293f75f8e4a0b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 847_A04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTGAGGCGTCCGTGAG-847_A04, GTGGATGCACCTGTAA-847_A04, TGACTCCTCGTTAAGC-847_A04, AATGCGCGTCTTACTA-847_A04, TGAGGAGGTTTAGCTC-847_A04 (top 5 of 7847 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
380,716,239
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 380716239
chr1 33380326
chr2 29856364
chr3 24909394
chr4 19884826
chr5 21069298
chr6 20956783
chr7 20565659
chr8 17454390
chr9 15577593
chr10 17667980
chr11 20063642
chr12 18800516
chr13 10362281
chr14 12765519
chr15 11698864
chr16 13991834
chr17 16102682
chr18 8797285
chr19 14235310
chr20 10016629
chr21 4458937
chr22 7896014
chrX 10080831
chrY 23964
GL000009.2 2273
GL000194.1 9593
GL000195.1 10116
GL000205.2 20806
GL000213.1 239
GL000218.1 7125
GL000219.1 33152
KI270711.1 901
KI270713.1 5869
KI270721.1 239
KI270726.1 311
KI270727.1 578
KI270728.1 6816
KI270731.1 625
KI270734.1 675

Fragment lengths

fragments min max mean median
fragments 380716239 1 5042 179.1 160
global fragment-length histogram

Files

Filename Size md5
237fca61a138a6c86f149b0271a293f75f8e4a0b.gz 3.56 GB e31b23c522d6bd1da70c18a551afd0a6
237fca61a138a6c86f149b0271a293f75f8e4a0b.gz.tbi 1.43 MB 00daeda5dc016bae9f1e96721b545a84
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b4724581ae1b4fcf89d14464982e7596
statistics/