Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/257acbad4daec630edb9e1275971e151093a9b97content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 257acbad4daec630edb9e1275971e151093a9b97
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 257acbad4daec630edb9e1275971e151093a9b97
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2229_A06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCTATTTAGTTATGTG-2229_A06, GGCGCTAGTCTTGCAT-2229_A06, ACGACAAAGGTGTTAC-2229_A06, TACGTTAAGGAACCGG-2229_A06, GCCAGGTTCTCAATAG-2229_A06 (top 5 of 3640 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
149,165,003
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 149165003
chr1 13531024
chr2 11515530
chr3 9618208
chr4 7292159
chr5 8042058
chr6 8141123
chr7 7638177
chr8 6656315
chr9 6484550
chr10 7130934
chr11 8041548
chr12 7216825
chr13 3897305
chr14 5111191
chr15 4684198
chr16 5475378
chr17 6927296
chr18 3303924
chr19 5669515
chr20 4026979
chr21 1713565
chr22 3202586
chrX 3808225
chrY 7997
GL000009.2 566
GL000194.1 4241
GL000195.1 5118
GL000205.2 7147
GL000213.1 74
GL000218.1 998
GL000219.1 5320
KI270711.1 304
KI270713.1 2320
KI270721.1 185
KI270726.1 12
KI270727.1 388
KI270728.1 1222
KI270731.1 202
KI270734.1 296

Fragment lengths

fragments min max mean median
fragments 149165003 1 5043 175.44 155
global fragment-length histogram

Files

Filename Size md5
257acbad4daec630edb9e1275971e151093a9b97.gz 1.42 GB 1ee920ee9e21fc8ce92e979ebbd2ef77
257acbad4daec630edb9e1275971e151093a9b97.gz.tbi 913.61 KB 08daf21c2cf70b93f228542363d2089c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a3903b360bb27887929f674dcd42d0a9
statistics/