Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/278deafe4dbebd073c09c92a9764101cd4bcfc35content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 278deafe4dbebd073c09c92a9764101cd4bcfc35
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 278deafe4dbebd073c09c92a9764101cd4bcfc35
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2459_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGTCAGGAGCTTAGTA-2459_A05, AGTAACGAGCTATGAC-2459_A05, GGGTGTTGTGTTTGCT-2459_A05, TCAGGTTAGCTGGAAA-2459_A05, GTGGACACAGCATGAG-2459_A05 (top 5 of 4340 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
192,836,620
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 192836620
chr1 17692479
chr2 14649874
chr3 12028362
chr4 9470250
chr5 10346249
chr6 10548518
chr7 9824152
chr8 8491758
chr9 8528121
chr10 9222099
chr11 10340312
chr12 9269319
chr13 5100073
chr14 6522378
chr15 5957374
chr16 7211423
chr17 9169643
chr18 4320690
chr19 8097456
chr20 5193435
chr21 2333703
chr22 4199361
chrX 4010984
chrY 266541
GL000009.2 1348
GL000194.1 3187
GL000195.1 5212
GL000205.2 10409
GL000213.1 11
GL000218.1 3790
GL000219.1 11253
KI270711.1 746
KI270713.1 4417
KI270721.1 167
KI270726.1 39
KI270727.1 216
KI270728.1 481
KI270731.1 108
KI270734.1 682

Fragment lengths

fragments min max mean median
fragments 192836620 1 5033 198.26 164
global fragment-length histogram

Files

Filename Size md5
278deafe4dbebd073c09c92a9764101cd4bcfc35.gz 1.77 GB f8a7556f6dfdad90dfc5e3669bd66d56
278deafe4dbebd073c09c92a9764101cd4bcfc35.gz.tbi 1002.01 KB 82a32763314492c92b6ada7e8e9dc4b8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1da1fee12096137cb18f3a663f9e489a
statistics/