Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/27e432319f3feb82561cfcef5be4f020440787c6content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 27e432319f3feb82561cfcef5be4f020440787c6
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 27e432319f3feb82561cfcef5be4f020440787c6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2517_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AATCTTGAGAAGCTAG-2517_B05, GAAGCTAAGGTGAAAT-2517_B05, ATAAGTCGTGGATTCA-2517_B05, CTGATCACACATTAAC-2517_B05, ATGGTCTAGGTTTGAC-2517_B05 (top 5 of 2422 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
135,432,193
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 135432193
chr1 11378355
chr2 10875071
chr3 9253792
chr4 7945751
chr5 8013965
chr6 7751748
chr7 7293074
chr8 6630314
chr9 5509454
chr10 6297653
chr11 6856375
chr12 6548772
chr13 4136061
chr14 4378268
chr15 3938671
chr16 4304381
chr17 4828744
chr18 3416013
chr19 3934977
chr20 3303656
chr21 1653783
chr22 2265471
chrX 4865418
chrY 21344
GL000009.2 1829
GL000194.1 2367
GL000195.1 3052
GL000205.2 8695
GL000213.1 135
GL000218.1 2240
GL000219.1 7448
KI270711.1 354
KI270713.1 1610
KI270721.1 108
KI270726.1 13
KI270727.1 494
KI270728.1 2275
KI270731.1 117
KI270734.1 345

Fragment lengths

fragments min max mean median
fragments 135432193 1 5035 198.19 166
global fragment-length histogram

Files

Filename Size md5
27e432319f3feb82561cfcef5be4f020440787c6.gz 1.31 GB 814129539892a721fad5c940157deb14
27e432319f3feb82561cfcef5be4f020440787c6.gz.tbi 917.16 KB f60f5e0b0f142b64a547259a05267e43
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 793af25d24852df6f90d3c4b92b2e6c6
statistics/