Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/28b1328cb33f27766dc9975af8a67e1f0a768a18content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 28b1328cb33f27766dc9975af8a67e1f0a768a18
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 28b1328cb33f27766dc9975af8a67e1f0a768a18
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1458_A09
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGGCCTAGTTACCGGG-1458_A09, GATTTGCAGTTAACCA-1458_A09, GCTGAGGAGGGCCATC-1458_A09, CGCATATAGGTTAGCT-1458_A09, TATTCGTTCATGGTTA-1458_A09 (top 5 of 717 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
20,033,996
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 20033996
chr1 1882239
chr2 1518267
chr3 1246788
chr4 929613
chr5 1039219
chr6 1077146
chr7 1005022
chr8 848359
chr9 909609
chr10 962676
chr11 1123247
chr12 929772
chr13 493619
chr14 668494
chr15 638924
chr16 757698
chr17 1022219
chr18 428227
chr19 885055
chr20 544181
chr21 233609
chr22 464404
chrX 397346
chrY 24645
GL000009.2 99
GL000194.1 404
GL000195.1 531
GL000205.2 947
GL000213.1 3
GL000218.1 288
GL000219.1 802
KI270711.1 69
KI270713.1 230
KI270721.1 11
KI270726.1 3
KI270727.1 16
KI270728.1 153
KI270731.1 15
KI270734.1 47

Fragment lengths

fragments min max mean median
fragments 20033996 1 4996 236.44 187
global fragment-length histogram

Files

Filename Size md5
28b1328cb33f27766dc9975af8a67e1f0a768a18.gz 188.09 MB 6daa4ef162701be0a923cb25d3e1a489
28b1328cb33f27766dc9975af8a67e1f0a768a18.gz.tbi 564.23 KB 9f7160133e3c69403c79a55782d04f19
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 25b8d71bfa51475e0261798e074ef056
statistics/