Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/28d26aee9ac4a3057513a5c9c9dfdef178c07e9ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 28d26aee9ac4a3057513a5c9c9dfdef178c07e9c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 28d26aee9ac4a3057513a5c9c9dfdef178c07e9c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 988_E05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAGCTCAAGGCTACTG-988_E05, AGTTGTCAGGAAGCTA-988_E05, TGAGCCGGTTGGTGAC-988_E05, GTATTGTCAACCTGGT-988_E05, GAGCCACTCGATTATG-988_E05 (top 5 of 7609 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
176,007,834
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 176007834
chr1 15660762
chr2 14035376
chr3 11634286
chr4 9336138
chr5 10000651
chr6 9898267
chr7 9466066
chr8 8107073
chr9 7311114
chr10 8206780
chr11 9357597
chr12 8753830
chr13 4827211
chr14 5920466
chr15 5382843
chr16 6175101
chr17 7418268
chr18 4099023
chr19 6258669
chr20 4564163
chr21 2018232
chr22 3584963
chrX 3735489
chrY 213022
GL000009.2 496
GL000194.1 5152
GL000195.1 4725
GL000205.2 8186
GL000213.1 95
GL000218.1 2064
GL000219.1 14314
KI270711.1 303
KI270713.1 2620
KI270721.1 60
KI270726.1 377
KI270727.1 363
KI270728.1 3059
KI270731.1 234
KI270734.1 396

Fragment lengths

fragments min max mean median
fragments 176007834 1 5058 174.49 163
global fragment-length histogram

Files

Filename Size md5
28d26aee9ac4a3057513a5c9c9dfdef178c07e9c.gz 1.73 GB e0dd7d71ffe5e3e97f44428ccaaa0802
28d26aee9ac4a3057513a5c9c9dfdef178c07e9c.gz.tbi 978.33 KB 9ac832616e633188aff993ae08a8577a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 04897e26c0075a9ff4f44f15a5185b64
statistics/