Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/2ac42aa8be90fc9cdcf6cf79e7c665c04ff1b73fcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 2ac42aa8be90fc9cdcf6cf79e7c665c04ff1b73f
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 2ac42aa8be90fc9cdcf6cf79e7c665c04ff1b73f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2344_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCCTGCTGTGCTCCGT-2344_A05, CTCTCACAGCGCCTTT-2344_A05, TACGGTTAGGCGGATG-2344_A05, TACAATGTCGCTCACT-2344_A05, GAGAACCAGGAGGTTA-2344_A05 (top 5 of 3827 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
138,765,989
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 138765989
chr1 12196217
chr2 11004487
chr3 9043609
chr4 7395004
chr5 7864960
chr6 7679754
chr7 7425193
chr8 6523974
chr9 5912971
chr10 6563392
chr11 7346199
chr12 6663399
chr13 3863222
chr14 4561165
chr15 4085089
chr16 4764755
chr17 5654015
chr18 3401292
chr19 4728041
chr20 3625091
chr21 1642572
chr22 2629714
chrX 4145940
chrY 12744
GL000009.2 610
GL000194.1 3023
GL000195.1 3117
GL000205.2 7728
GL000213.1 60
GL000218.1 2161
GL000219.1 10011
KI270711.1 365
KI270713.1 1364
KI270721.1 89
KI270726.1 7
KI270727.1 286
KI270728.1 4015
KI270731.1 94
KI270734.1 260

Fragment lengths

fragments min max mean median
fragments 138765989 1 5041 168.11 154
global fragment-length histogram

Files

Filename Size md5
2ac42aa8be90fc9cdcf6cf79e7c665c04ff1b73f.gz 1.33 GB b05f3099580b888ab01f43708a4b29fc
2ac42aa8be90fc9cdcf6cf79e7c665c04ff1b73f.gz.tbi 896.85 KB 6e608341b4941ae830fb6b4732d6e360
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 32dfb2d923ba486010e3b01f99141496
statistics/