Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/2ce39e90e70fb8372c214b72225f215a58fd1a4ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 2ce39e90e70fb8372c214b72225f215a58fd1a4c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 2ce39e90e70fb8372c214b72225f215a58fd1a4c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2508_B07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GACATAGAGTGAGCAA-2508_B07, CGGTTTGAGGCTTAGT-2508_B07, TGGACGGAGTTTCCTG-2508_B07, TACGTTAAGCGCTCAA-2508_B07, CACAATATCCTAGTCC-2508_B07 (top 5 of 3024 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
183,626,908
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 183626908
chr1 16262589
chr2 14337446
chr3 12108580
chr4 9702266
chr5 10313989
chr6 10209092
chr7 9780031
chr8 8575481
chr9 7584474
chr10 8560293
chr11 9678099
chr12 8936195
chr13 5152083
chr14 6094835
chr15 5606503
chr16 6495930
chr17 7653993
chr18 4318912
chr19 6722414
chr20 4737234
chr21 2185559
chr22 3625612
chrX 4933709
chrY 12706
GL000009.2 1356
GL000194.1 3364
GL000195.1 4446
GL000205.2 10018
GL000213.1 115
GL000218.1 2372
GL000219.1 10762
KI270711.1 348
KI270713.1 3079
KI270721.1 166
KI270726.1 9
KI270727.1 754
KI270728.1 1494
KI270731.1 140
KI270734.1 460

Fragment lengths

fragments min max mean median
fragments 183626908 1 5040 200.14 167
global fragment-length histogram

Files

Filename Size md5
2ce39e90e70fb8372c214b72225f215a58fd1a4c.gz 1.71 GB 1eed869b836ab9cd0adc95b0ae089918
2ce39e90e70fb8372c214b72225f215a58fd1a4c.gz.tbi 995.81 KB e8277ba4e6be208617615e8b4418c043
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB dfcf9181d961b80dd8e9149aa82f87ed
statistics/