Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/307f6497935cd43d556b3576943746f7d20d4daccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 307f6497935cd43d556b3576943746f7d20d4dac
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 307f6497935cd43d556b3576943746f7d20d4dac
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1959_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CATCAATCAGGCAAGC-1959_A02, GACCGTTCACTTGTTC-1959_A02, AAGCGCTGTGCACGCA-1959_A02, CTGCTACTCTTAGCGG-1959_A02, GCCTTTGGTGTTGTAG-1959_A02 (top 5 of 5642 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
216,668,247
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 216668247
chr1 19483652
chr2 16703356
chr3 13759673
chr4 10955729
chr5 11785137
chr6 11862870
chr7 11443257
chr8 9730347
chr9 9143428
chr10 10082103
chr11 11462852
chr12 10519881
chr13 5871763
chr14 7281362
chr15 6690325
chr16 8128636
chr17 9796140
chr18 4846457
chr19 9066331
chr20 5802591
chr21 2649868
chr22 4572530
chrX 4642383
chrY 335942
GL000009.2 1359
GL000194.1 6054
GL000195.1 9528
GL000205.2 13181
GL000213.1 28
GL000218.1 1816
GL000219.1 7938
KI270711.1 232
KI270713.1 6712
KI270721.1 248
KI270726.1 201
KI270727.1 635
KI270728.1 2730
KI270731.1 122
KI270734.1 850

Fragment lengths

fragments min max mean median
fragments 216668247 1 5041 141.31 119
global fragment-length histogram

Files

Filename Size md5
307f6497935cd43d556b3576943746f7d20d4dac.gz 2.0 GB dd45c323c3ed178b69bb00f86ebc04f6
307f6497935cd43d556b3576943746f7d20d4dac.gz.tbi 1.06 MB e8d669b147807afa2364f76278291452
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 33ee718dbc3fb905ff51416c6e0a7e57
statistics/