Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/31086fc804b4adfb5d6eefce81d536404e1a3126content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 31086fc804b4adfb5d6eefce81d536404e1a3126
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 31086fc804b4adfb5d6eefce81d536404e1a3126
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1091_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGCCATCAGCTGGAAA-1091_A05, GGAGTGAGTGGAGCAA-1091_A05, CGAAGCCTCGCTAAAC-1091_A05, TTGGGTTAGGTGAAGC-1091_A05, AAACGTACAGCAAGTG-1091_A05 (top 5 of 5498 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
219,218,435
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 219218435
chr1 19405829
chr2 17144108
chr3 14218353
chr4 11345238
chr5 12099181
chr6 12128019
chr7 11703220
chr8 10133177
chr9 8880817
chr10 10222842
chr11 11619976
chr12 10751835
chr13 5952321
chr14 7264830
chr15 6759058
chr16 8006053
chr17 9415761
chr18 4937920
chr19 8432142
chr20 5802111
chr21 2541929
chr22 4379073
chrX 6000482
chrY 15932
GL000009.2 1598
GL000194.1 4907
GL000195.1 6452
GL000205.2 12355
GL000213.1 122
GL000218.1 3517
GL000219.1 19363
KI270711.1 506
KI270713.1 4104
KI270721.1 79
KI270726.1 178
KI270727.1 351
KI270728.1 4035
KI270731.1 289
KI270734.1 372

Fragment lengths

fragments min max mean median
fragments 219218435 1 5041 167.82 158
global fragment-length histogram

Files

Filename Size md5
31086fc804b4adfb5d6eefce81d536404e1a3126.gz 2.07 GB 07d7eb684f67d2098ee51e970f8b62b0
31086fc804b4adfb5d6eefce81d536404e1a3126.gz.tbi 1.08 MB ffd6d46ad689a226514bd5bb2ac419e1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 51d462f74139678eb179a6fd7f27d6c1
statistics/