Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3126961940d5ca2fbcac2f6b38cb091d41aee6b5content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 3126961940d5ca2fbcac2f6b38cb091d41aee6b5
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3126961940d5ca2fbcac2f6b38cb091d41aee6b5
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 980_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTGAGGCGTTACAAAC-980_C02, CCGCTAGCAGAGGGAG-980_C02, GCTATTGCAAACCTAT-980_C02, GCGATTTAGGTTAGAG-980_C02, CTCCGGACAGGAACTG-980_C02 (top 5 of 4516 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
209,641,410
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 209641410
chr1 18454128
chr2 16927904
chr3 13956323
chr4 11336630
chr5 12019942
chr6 11868143
chr7 11402576
chr8 9733659
chr9 8643532
chr10 9783615
chr11 10974544
chr12 10449259
chr13 5880953
chr14 7095551
chr15 6411330
chr16 7273751
chr17 8576531
chr18 4845875
chr19 7184825
chr20 5392459
chr21 2465268
chr22 4113602
chrX 4542135
chrY 260405
GL000009.2 512
GL000194.1 6072
GL000195.1 5176
GL000205.2 8979
GL000213.1 108
GL000218.1 2428
GL000219.1 16651
KI270711.1 459
KI270713.1 3030
KI270721.1 83
KI270726.1 376
KI270727.1 398
KI270728.1 3398
KI270731.1 337
KI270734.1 463

Fragment lengths

fragments min max mean median
fragments 209641410 1 5041 192.22 165
global fragment-length histogram

Files

Filename Size md5
3126961940d5ca2fbcac2f6b38cb091d41aee6b5.gz 1.99 GB ffdb4a51e4898b4557eee4f85886ade5
3126961940d5ca2fbcac2f6b38cb091d41aee6b5.gz.tbi 1.05 MB e78581a19e2ba42483e676ebacebc642
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 671bc56db422746a558a45236b0a65fc
statistics/