Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/330eec09db45351ac25246472720007ccbe87d04content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 330eec09db45351ac25246472720007ccbe87d04
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 330eec09db45351ac25246472720007ccbe87d04
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2346_A06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGAGCGAAGTGCACGC-2346_A06, CTAGCTGAGTCATTTC-2346_A06, GCGTTTCTCGACAAAG-2346_A06, CACCTCAGTTCCGGCT-2346_A06, AGTTGGCGTGAGACTC-2346_A06 (top 5 of 3951 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
181,194,620
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 181194620
chr1 15797423
chr2 14245997
chr3 11848208
chr4 9794193
chr5 10232075
chr6 10112107
chr7 9755181
chr8 8368675
chr9 7408240
chr10 8392106
chr11 9431578
chr12 8830882
chr13 5141350
chr14 6070975
chr15 5485855
chr16 6464455
chr17 7330939
chr18 4342213
chr19 6414263
chr20 4721401
chr21 2164905
chr22 3517004
chrX 5253992
chrY 15569
GL000009.2 619
GL000194.1 5174
GL000195.1 5118
GL000205.2 14271
GL000213.1 58
GL000218.1 3646
GL000219.1 17323
KI270711.1 484
KI270713.1 1691
KI270721.1 96
KI270726.1 13
KI270727.1 320
KI270728.1 5764
KI270731.1 170
KI270734.1 287

Fragment lengths

fragments min max mean median
fragments 181194620 1 5038 159.67 140
global fragment-length histogram

Files

Filename Size md5
330eec09db45351ac25246472720007ccbe87d04.gz 1.73 GB aa850dbf6c426a6a88d35cb17a8c1419
330eec09db45351ac25246472720007ccbe87d04.gz.tbi 1.01 MB cf01e78f51788de0d8ebe6d0b8854410
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB d9289ca9b11980c0c4c0208a09cbf7e9
statistics/