Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/345ba40bce2798988bfcafadadde06022ace7104content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 345ba40bce2798988bfcafadadde06022ace7104
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 345ba40bce2798988bfcafadadde06022ace7104
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1477_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTCTTAGGTGAGGTAG-1477_A07, AATAGAGGTTAGTGAT-1477_A07, ACAGCGCTCTAACCTT-1477_A07, GAGAGGCGTAACTACG-1477_A07, AGCCTAAGTGTTAAAC-1477_A07 (top 5 of 3511 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
106,616,937
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 106616937
chr1 10250645
chr2 7944566
chr3 6418109
chr4 4529925
chr5 5316510
chr6 5615924
chr7 5248186
chr8 4290489
chr9 4943425
chr10 5121217
chr11 6011846
chr12 5004101
chr13 2512331
chr14 3597181
chr15 3449799
chr16 4261019
chr17 5779229
chr18 2146063
chr19 5243288
chr20 2948862
chr21 1250700
chr22 2592308
chrX 2011900
chrY 110466
GL000009.2 346
GL000194.1 2086
GL000195.1 3117
GL000205.2 4359
GL000213.1 16
GL000218.1 1376
GL000219.1 4331
KI270711.1 311
KI270713.1 1594
KI270721.1 70
KI270726.1 11
KI270727.1 91
KI270728.1 814
KI270731.1 92
KI270734.1 234

Fragment lengths

fragments min max mean median
fragments 106616937 1 5025 217.35 177
global fragment-length histogram

Files

Filename Size md5
345ba40bce2798988bfcafadadde06022ace7104.gz 1007.21 MB b613ca63405aeeff7491209cd0d8183c
345ba40bce2798988bfcafadadde06022ace7104.gz.tbi 770.55 KB f9c4f68a715db0d684e0ab2bd92715b9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 190c458d38b507771d14bc1305b54449
statistics/