Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/35048332360a3bbe252e345b025fb2ae7070b96ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 35048332360a3bbe252e345b025fb2ae7070b96c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 35048332360a3bbe252e345b025fb2ae7070b96c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1279_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTCATGAGTTAGGTTG-1279_A07, TATCGCACAGCCTGCA-1279_A07, ATGTTGTCACAGGAAT-1279_A07, CGTCCTAGTCCGTGAG-1279_A07, CGTGCTGCACCTGTAA-1279_A07 (top 5 of 2104 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
79,906,933
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 79906933
chr1 7576295
chr2 6028446
chr3 4944436
chr4 3614197
chr5 4154747
chr6 4356346
chr7 3997056
chr8 3287490
chr9 3641939
chr10 3895220
chr11 4459505
chr12 3756388
chr13 1979067
chr14 2722237
chr15 2565816
chr16 3020672
chr17 4062632
chr18 1687536
chr19 3600448
chr20 2153106
chr21 941331
chr22 1802586
chrX 1552179
chrY 90991
GL000009.2 393
GL000194.1 2744
GL000195.1 2778
GL000205.2 3083
GL000213.1 13
GL000218.1 922
GL000219.1 2786
KI270711.1 199
KI270713.1 2867
KI270721.1 33
KI270726.1 8
KI270727.1 100
KI270728.1 109
KI270731.1 39
KI270734.1 193

Fragment lengths

fragments min max mean median
fragments 79906933 1 5041 215.57 178
global fragment-length histogram

Files

Filename Size md5
35048332360a3bbe252e345b025fb2ae7070b96c.gz 734.5 MB 3ee5346de8e942f5a749cb66f9380480
35048332360a3bbe252e345b025fb2ae7070b96c.gz.tbi 701.7 KB 980f9d32bea666c17b1eb50a0db4704c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 40f8e644094a063fef32415927eef8b2
statistics/