Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/36c1b6ed8d97cac1675605754b7081748ac90487content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 36c1b6ed8d97cac1675605754b7081748ac90487
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 36c1b6ed8d97cac1675605754b7081748ac90487
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2305_D01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACGGGAAGTGCTCACC-2305_D01, AATCTTGAGTAGCTTA-2305_D01, ATAGCATGTTGCGCGA-2305_D01, TTCTTAGGTTGGATAT-2305_D01, CAGGTGGAGGTCCTGA-2305_D01 (top 5 of 4633 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
232,867,984
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 232867984
chr1 20642592
chr2 18302239
chr3 15099727
chr4 12105473
chr5 13017808
chr6 12843574
chr7 12358153
chr8 10745328
chr9 9536993
chr10 10779294
chr11 12265122
chr12 11318148
chr13 6488405
chr14 7813331
chr15 7123078
chr16 8392524
chr17 9908518
chr18 5392592
chr19 8633450
chr20 6194365
chr21 2712205
chr22 4704820
chrX 6410501
chrY 14940
GL000009.2 620
GL000194.1 5116
GL000195.1 7223
GL000205.2 17523
GL000213.1 62
GL000218.1 3569
GL000219.1 21884
KI270711.1 509
KI270713.1 2129
KI270721.1 106
KI270726.1 5
KI270727.1 475
KI270728.1 4960
KI270731.1 154
KI270734.1 469

Fragment lengths

fragments min max mean median
fragments 232867984 1 5041 177.11 157
global fragment-length histogram

Files

Filename Size md5
36c1b6ed8d97cac1675605754b7081748ac90487.gz 2.19 GB 5723b84e66e6388c1baf2f397540c6a6
36c1b6ed8d97cac1675605754b7081748ac90487.gz.tbi 1.12 MB 94a9dbdc48cbb380359c515def58bb75
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB ce4c86282d478ae6735864a2cc01e2a7
statistics/