Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/37b5d076acd9bde5271749560a5702efde30ae24content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 37b5d076acd9bde5271749560a5702efde30ae24
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 37b5d076acd9bde5271749560a5702efde30ae24
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2016_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACGTTACAGGCTGTGC-2016_B03, GCTGTGCAGGTCGAGG-2016_B03, CCAGGAACATCCAGGT-2016_B03, TAGCCTTGTTGAGCCG-2016_B03, CAACAGGCAAGCTTAT-2016_B03 (top 5 of 5755 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
286,755,431
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 286755431
chr1 25649704
chr2 21949590
chr3 18233345
chr4 14411084
chr5 15550256
chr6 15665327
chr7 15397469
chr8 12689908
chr9 11848038
chr10 13111071
chr11 15339883
chr12 14289071
chr13 7644283
chr14 9841270
chr15 8889507
chr16 11015532
chr17 12961198
chr18 6407024
chr19 12128722
chr20 7655101
chr21 3450585
chr22 6232021
chrX 5911125
chrY 420409
GL000009.2 1467
GL000194.1 8930
GL000195.1 9855
GL000205.2 17309
GL000213.1 25
GL000218.1 2459
GL000219.1 9280
KI270711.1 207
KI270713.1 9093
KI270721.1 299
KI270726.1 245
KI270727.1 593
KI270728.1 3049
KI270731.1 132
KI270734.1 965

Fragment lengths

fragments min max mean median
fragments 286755431 1 5038 168.43 156
global fragment-length histogram

Files

Filename Size md5
37b5d076acd9bde5271749560a5702efde30ae24.gz 2.63 GB 0c043248b09fa805f0c18dff47ea2ace
37b5d076acd9bde5271749560a5702efde30ae24.gz.tbi 1.23 MB befff0c3628a02011784aa1fb26ea1b5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB fa919c2eaa89e16f1011447681bc2d96
statistics/