Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/382c7182ad442711600f409f1c80c6e7349dac23content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 382c7182ad442711600f409f1c80c6e7349dac23
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 382c7182ad442711600f409f1c80c6e7349dac23
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2305_E01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TAGCGGACAACGTGCT-2305_E01, CATCACACAAGGACCA-2305_E01, CGGTGAGAGTGAGGGT-2305_E01, TCAGCCTTCTTGCAAA-2305_E01, GATCAGGCAACTAGAA-2305_E01 (top 5 of 5055 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
219,210,417
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 219210417
chr1 19376030
chr2 17152910
chr3 14290903
chr4 11528217
chr5 12184381
chr6 12175003
chr7 11691539
chr8 10076983
chr9 8931641
chr10 10212054
chr11 11515137
chr12 10641107
chr13 6033844
chr14 7345482
chr15 6749928
chr16 7976004
chr17 9213840
chr18 5140780
chr19 8080210
chr20 5781683
chr21 2578401
chr22 4459461
chrX 5993189
chrY 15005
GL000009.2 655
GL000194.1 5694
GL000195.1 6742
GL000205.2 17958
GL000213.1 48
GL000218.1 4123
GL000219.1 22485
KI270711.1 448
KI270713.1 1920
KI270721.1 108
KI270726.1 10
KI270727.1 407
KI270728.1 5449
KI270731.1 175
KI270734.1 463

Fragment lengths

fragments min max mean median
fragments 219210417 1 5034 172.16 155
global fragment-length histogram

Files

Filename Size md5
382c7182ad442711600f409f1c80c6e7349dac23.gz 2.09 GB 8d43bfee2ce0f3fe97d1f35114662981
382c7182ad442711600f409f1c80c6e7349dac23.gz.tbi 1.09 MB 12d3079688ae3a1b2cb6240558cdbe44
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 5103984ed1554e7fadc9bf4be2dedbdd
statistics/