Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/38ad384f2bffb2ac1c8d631e3cdef1bef8418143content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 38ad384f2bffb2ac1c8d631e3cdef1bef8418143
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 38ad384f2bffb2ac1c8d631e3cdef1bef8418143
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2414_A01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCTACTGGTTGCGGAT-2414_A01, GGCGTTATCTTAGGGT-2414_A01, TGGACTAGTTACTTCA-2414_A01, CTTAAGATCGGCTATG-2414_A01, TTAGGATGTTAATGCG-2414_A01 (top 5 of 2737 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
124,021,680
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 124021680
chr1 11264457
chr2 9515903
chr3 7725085
chr4 5931559
chr5 6536849
chr6 6866006
chr7 6283259
chr8 5398739
chr9 5468368
chr10 5957056
chr11 6737372
chr12 5927013
chr13 3222745
chr14 4142253
chr15 3871052
chr16 4583218
chr17 5887680
chr18 2770627
chr19 5206835
chr20 3309384
chr21 1522509
chr22 2615309
chrX 3237706
chrY 9987
GL000009.2 725
GL000194.1 4289
GL000195.1 4844
GL000205.2 8720
GL000213.1 79
GL000218.1 1200
GL000219.1 5976
KI270711.1 322
KI270713.1 2220
KI270721.1 147
KI270726.1 21
KI270727.1 454
KI270728.1 1398
KI270731.1 114
KI270734.1 200

Fragment lengths

fragments min max mean median
fragments 124021680 1 5036 174.98 150
global fragment-length histogram

Files

Filename Size md5
38ad384f2bffb2ac1c8d631e3cdef1bef8418143.gz 1.14 GB 0b8ea9a1cbf94697a8c955d8f58c5746
38ad384f2bffb2ac1c8d631e3cdef1bef8418143.gz.tbi 820.19 KB f6cc0a30ebc7be5f7116069f481eccdb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 828268308a118ce14ef0df4d30026103
statistics/