Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/38c93760ac78dc15675444f40186eea935b540a8content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 38c93760ac78dc15675444f40186eea935b540a8
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 38c93760ac78dc15675444f40186eea935b540a8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2386_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAGAATCTCAAAGGCA-2386_A02, CAGGGCTTCATTAGCA-2386_A02, GAGAACCAGTAACAGG-2386_A02, GTGGATGCAAGGAATC-2386_A02, GTGTAACTCGTCAAGT-2386_A02 (top 5 of 8148 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
253,736,274
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 253736274
chr1 22860632
chr2 19707032
chr3 16387091
chr4 12830023
chr5 13820413
chr6 13965726
chr7 13477030
chr8 11356080
chr9 10649768
chr10 11879043
chr11 13613891
chr12 12337155
chr13 6712655
chr14 8556077
chr15 8065799
chr16 9629084
chr17 11378876
chr18 5823789
chr19 9880700
chr20 6870265
chr21 2963810
chr22 5400590
chrX 5191523
chrY 333147
GL000009.2 831
GL000194.1 4513
GL000195.1 7021
GL000205.2 14279
GL000213.1 72
GL000218.1 1922
GL000219.1 10227
KI270711.1 634
KI270713.1 4710
KI270721.1 224
KI270726.1 36
KI270727.1 167
KI270728.1 706
KI270731.1 187
KI270734.1 546

Fragment lengths

fragments min max mean median
fragments 253736274 1 5039 169.06 155
global fragment-length histogram

Files

Filename Size md5
38c93760ac78dc15675444f40186eea935b540a8.gz 2.42 GB 8bbdf58cbba983ee5b288aa04ac3cd4a
38c93760ac78dc15675444f40186eea935b540a8.gz.tbi 1.16 MB 3bd2ef54ef3e793fb1db4241f0e14a30
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 14367c1e8a22a19cc540c0e1df3b9470
statistics/