Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3a819f63e0d81fc9225e04d661d8c46fa651f252content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 3a819f63e0d81fc9225e04d661d8c46fa651f252
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3a819f63e0d81fc9225e04d661d8c46fa651f252
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2006_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACTCACTGTAGCCATA-2006_B05, TGTTAGCAGCCGCAGT-2006_B05, ATGGCCCAGCTAAGTC-2006_B05, TTTGGCTGTCTAACCT-2006_B05, CTGTTTAGTGCACGCA-2006_B05 (top 5 of 6224 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
298,285,855
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 298285855
chr1 26784873
chr2 23403190
chr3 19211260
chr4 15092114
chr5 16395672
chr6 16465053
chr7 15926196
chr8 13384916
chr9 12577417
chr10 13997257
chr11 15935111
chr12 14689721
chr13 8030612
chr14 10003147
chr15 9237151
chr16 10968395
chr17 13137134
chr18 6736492
chr19 11806705
chr20 8033523
chr21 3541114
chr22 6095238
chrX 6356422
chrY 420448
GL000009.2 1237
GL000194.1 7283
GL000195.1 9670
GL000205.2 13579
GL000213.1 18
GL000218.1 1968
GL000219.1 8719
KI270711.1 305
KI270713.1 8680
KI270721.1 280
KI270726.1 254
KI270727.1 633
KI270728.1 3028
KI270731.1 108
KI270734.1 932

Fragment lengths

fragments min max mean median
fragments 298285855 1 5036 178.6 159
global fragment-length histogram

Files

Filename Size md5
3a819f63e0d81fc9225e04d661d8c46fa651f252.gz 2.79 GB a100dcd2ec1b6574f3af93e4441ede5a
3a819f63e0d81fc9225e04d661d8c46fa651f252.gz.tbi 1.26 MB 66ee8d53dfa0e569ef4e69047709d6dd
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9926c1e1e236b32c9a9148a7fc0f6f16
statistics/