Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3e72981f0bfa990c8698b23ae8eefd18d4822dd8content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 3e72981f0bfa990c8698b23ae8eefd18d4822dd8
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3e72981f0bfa990c8698b23ae8eefd18d4822dd8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2018_D01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTGTGGCAATATAGG-2018_D01, GTTTGTCGTCAATAGT-2018_D01, TGAGGTGCAATGCCTA-2018_D01, TCCTTGCAGCGATACT-2018_D01, TTTACGAAGGTTACAC-2018_D01 (top 5 of 1886 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
84,960,743
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 84960743
chr1 7817705
chr2 6567535
chr3 5307092
chr4 4275178
chr5 4511642
chr6 4720159
chr7 4339019
chr8 3677294
chr9 3779094
chr10 4028419
chr11 4612581
chr12 4028668
chr13 2301986
chr14 2856480
chr15 2583925
chr16 3074828
chr17 3986218
chr18 1925229
chr19 3631678
chr20 2206892
chr21 1056150
chr22 1727062
chrX 1796784
chrY 128353
GL000009.2 652
GL000194.1 2165
GL000195.1 3777
GL000205.2 4668
GL000213.1 7
GL000218.1 628
GL000219.1 3505
KI270711.1 150
KI270713.1 2991
KI270721.1 90
KI270726.1 74
KI270727.1 203
KI270728.1 1670
KI270731.1 29
KI270734.1 163

Fragment lengths

fragments min max mean median
fragments 84960743 1 5035 176.01 157
global fragment-length histogram

Files

Filename Size md5
3e72981f0bfa990c8698b23ae8eefd18d4822dd8.gz 793.7 MB bbab38e524e4de666efa5ba8834ed8c0
3e72981f0bfa990c8698b23ae8eefd18d4822dd8.gz.tbi 719.01 KB 8e608363da869f71682f3cf69ac2c944
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f3e184dbd19c2771b0b3ca0771322845
statistics/