Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3e7aceb10f4ccc66e4c5dbff9566f255644f63f1content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 3e7aceb10f4ccc66e4c5dbff9566f255644f63f1
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3e7aceb10f4ccc66e4c5dbff9566f255644f63f1
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2256_C03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGGTGTTGTAACAGGG-2256_C03, CGCAATAGTTGAGGTC-2256_C03, GGGCTAACATGAATAG-2256_C03, TCCAGGATCCGCCAAA-2256_C03, TCCATCATCCAGGTTG-2256_C03 (top 5 of 5477 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
431,456,990
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 431456990
chr1 38070733
chr2 33687527
chr3 28364195
chr4 22540064
chr5 23894592
chr6 24148197
chr7 22765146
chr8 19559445
chr9 17813266
chr10 20181710
chr11 22763869
chr12 21048576
chr13 11901591
chr14 14421980
chr15 13384744
chr16 15665145
chr17 18473649
chr18 9953581
chr19 15839327
chr20 11363970
chr21 5116296
chr22 8806374
chrX 11576479
chrY 27896
GL000009.2 2019
GL000194.1 15060
GL000195.1 12490
GL000205.2 22192
GL000213.1 265
GL000218.1 3713
GL000219.1 19757
KI270711.1 660
KI270713.1 5694
KI270721.1 413
KI270726.1 41
KI270727.1 904
KI270728.1 4083
KI270731.1 544
KI270734.1 803

Fragment lengths

fragments min max mean median
fragments 431456990 1 5040 196.92 165
global fragment-length histogram

Files

Filename Size md5
3e7aceb10f4ccc66e4c5dbff9566f255644f63f1.gz 3.98 GB e393aea48af4fb629e2e83dc24235af7
3e7aceb10f4ccc66e4c5dbff9566f255644f63f1.gz.tbi 1.52 MB 9fb68f251fdfaa82daf80417fb495207
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9e296258e83fde60eb07b91e94a4907c
statistics/