Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3ec148dd4520ccd99247689996157b2b85622d34content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 3ec148dd4520ccd99247689996157b2b85622d34
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3ec148dd4520ccd99247689996157b2b85622d34
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2368_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GATTTGCAGGCGAAAC-2368_A02, AGGTTGCGTCATTGTC-2368_A02, CAGGTGGAGTAATCCA-2368_A02, GACACCGGTCATTGAG-2368_A02, AGGACTAAGTAAGTCC-2368_A02 (top 5 of 3882 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
145,869,707
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 145869707
chr1 13427533
chr2 11146264
chr3 9117157
chr4 6949583
chr5 7751314
chr6 8008794
chr7 7520403
chr8 6328056
chr9 6358717
chr10 6921910
chr11 7882980
chr12 7118889
chr13 3796024
chr14 4841966
chr15 4534827
chr16 5486030
chr17 6970238
chr18 3239799
chr19 6390921
chr20 3982858
chr21 1744752
chr22 3069617
chrX 3057132
chrY 197320
GL000009.2 518
GL000194.1 2195
GL000195.1 4332
GL000205.2 7536
GL000213.1 41
GL000218.1 947
GL000219.1 5460
KI270711.1 528
KI270713.1 4036
KI270721.1 148
KI270726.1 17
KI270727.1 113
KI270728.1 377
KI270731.1 78
KI270734.1 297

Fragment lengths

fragments min max mean median
fragments 145869707 1 5034 174.99 154
global fragment-length histogram

Files

Filename Size md5
3ec148dd4520ccd99247689996157b2b85622d34.gz 1.35 GB f69b66c2890bfde48312fa3fcf5509a9
3ec148dd4520ccd99247689996157b2b85622d34.gz.tbi 886.04 KB 68aed4ff4c1b6c7c3fa23fbaa5466187
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9ece969495b7e86bb92b2c6173a26259
statistics/