Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3f8802c4845985e8290a1041514906b38de36452content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 3f8802c4845985e8290a1041514906b38de36452
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3f8802c4845985e8290a1041514906b38de36452
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2018_B01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCCAATAGTTGTTCAC-2018_B01, CATCCTCAGAGGAGTC-2018_B01, AAACCGCGTGTCCAGG-2018_B01, ACTTTGTTCATTAGTG-2018_B01, CAAACATGTAACCACA-2018_B01 (top 5 of 6060 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
389,454,478
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 389454478
chr1 34807567
chr2 30103307
chr3 24933748
chr4 19526051
chr5 21199044
chr6 21558586
chr7 20829615
chr8 17309279
chr9 15976685
chr10 18061400
chr11 20844307
chr12 19383647
chr13 10309785
chr14 13250162
chr15 12177650
chr16 14915668
chr17 17449906
chr18 8677480
chr19 16039405
chr20 10486340
chr21 4603756
chr22 8292553
chrX 8081665
chrY 551594
GL000009.2 1817
GL000194.1 11358
GL000195.1 13416
GL000205.2 23305
GL000213.1 31
GL000218.1 3314
GL000219.1 12455
KI270711.1 324
KI270713.1 12081
KI270721.1 354
KI270726.1 383
KI270727.1 816
KI270728.1 4265
KI270731.1 168
KI270734.1 1191

Fragment lengths

fragments min max mean median
fragments 389454478 1 5041 180.2 160
global fragment-length histogram

Files

Filename Size md5
3f8802c4845985e8290a1041514906b38de36452.gz 3.56 GB 90c938a39f684abb5cb6a51b564b0fa3
3f8802c4845985e8290a1041514906b38de36452.gz.tbi 1.45 MB 0bc04c31d02a998bb2dfa68bccd06b39
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 06cc218331528d61b0046b2c33a0e3f3
statistics/