Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/40905f2c12ee49177f6f0829bb9ea35a9068674dcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 40905f2c12ee49177f6f0829bb9ea35a9068674d
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 40905f2c12ee49177f6f0829bb9ea35a9068674d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2306_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGAGCGAAGTGAACGA-2306_A02, CTGTTGGAGTAGAGGC-2306_A02, GAGCTAGCAGGCCTTG-2306_A02, TTAGGCTAGGCCGGAA-2306_A02, ACCAATATCCTAACGG-2306_A02 (top 5 of 4406 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
318,194,729
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 318194729
chr1 27875850
chr2 25029292
chr3 20888248
chr4 16872550
chr5 17869892
chr6 17819156
chr7 17138428
chr8 14622555
chr9 12899922
chr10 14809737
chr11 16640868
chr12 15579601
chr13 8804634
chr14 10742652
chr15 9750968
chr16 11556572
chr17 13114231
chr18 7482490
chr19 11430399
chr20 8308787
chr21 3740714
chr22 6297875
chrX 8803187
chrY 22518
GL000009.2 975
GL000194.1 8649
GL000195.1 8595
GL000205.2 23533
GL000213.1 81
GL000218.1 6471
GL000219.1 31463
KI270711.1 727
KI270713.1 2944
KI270721.1 152
KI270726.1 14
KI270727.1 487
KI270728.1 8732
KI270731.1 288
KI270734.1 492

Fragment lengths

fragments min max mean median
fragments 318194729 1 5038 182.05 159
global fragment-length histogram

Files

Filename Size md5
40905f2c12ee49177f6f0829bb9ea35a9068674d.gz 2.96 GB 7a07a4ee7f400fab6ee6d658829dbe3a
40905f2c12ee49177f6f0829bb9ea35a9068674d.gz.tbi 1.32 MB 4b85cd5d52ff1d6e1e707681d8dda738
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB ce6c00781fe873e865e239eac77f18c4
statistics/